Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g02505 ATGGGGAGGTGTAAGATTGAGGTCAAAAGGATTGAAAAATCAAGCAACAGACAAGTTACTTTTTTAAAGAGGAAGAATGGAATCCTTAAGAAGGCAAAAGAAATAAGTGTTCTTTGTGATTCTCAAGTTTCCATTATTCTCTCTAGTGAATCTGGAAAGATCCATGAATACATCAGTCCCTCCACCACATTGATTGATGTCCTAGACAGATACCAGAGAGCCACAAGGAAAACACTTTGGGATGCTGAGCTTGAGAGTCTTAGCAATGAAATTGATACAATCAAAAAGGAGAATGAAAACATGGAACTTCAGCTGAGGCACTTGAAGGGTAAGAACATTACCTCATTGAATTTCAATGAGCTTATGACCCTTGAGGATTCCCTTGAAAATGGCCTTACTGGTGTTCGTGACAAAATGAAGCAAGTGCATAGGATGGTCAAGAGAAATGGTGAGATTTTGGAGGAACAAAATAAGGAACTAGATTTGTTTCTGCAACAGCATATGGCAGTGGAAGATGTGGGAAATATGCATGCTTAG 537 0.3892 MGRCKIEVKRIEKSSNRQVTFLKRKNGILKKAKEISVLCDSQVSIILSSESGKIHEYISPSTTLIDVLDRYQRATRKTLWDAELESLSNEIDTIKKENENMELQLRHLKGKNITSLNFNELMTLEDSLENGLTGVRDKMKQVHRMVKRNGEILEEQNKELDLFLQQHMAVEDVGNMHA 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g02505 178 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677|GO:0046983
Tsu03g02505 178 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 172 - -
Tsu03g02505 178 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Tsu03g02505 178 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Tsu03g02505 178 Gene3D - 14 102 IPR036879 GO:0003677|GO:0046983
Tsu03g02505 178 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Tsu03g02505 178 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 172 - -
Tsu03g02505 178 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Tsu03g02505 178 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Tsu03g02505 178 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Tsu03g02505 178 ProSiteProfiles K-box domain profile. 84 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Tsu03g02505 178 Coils Coil 77 111 - -
Tsu03g02505 178 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Tsu03g02505 178 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Tsu03g02505 178 Pfam K-box region 83 161 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g02505 Tsu-Chr3 29644699 29645235 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g02505 1 146 MADS-box Gene Family AT5G20240 54.110 2.19e-53 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Tsu03g02505 K-box 4.7e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g02505 K09264 - gmx:100306010 272.707