Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g02498 ATGACTATTCAACAAACCATAgatgattcttcttcttcttcatcatcttcttctacAGTGGTATCTTTGAAAAAGTATGATGTTTTTATAAACTTTCACGGTGAGGATACTCGTAAAAATTTCACAAGCCATCTACAAGCTGCTCTGAGCAAAGAAGTTATAACCTTTATTGACGAAAATGAGCTTGAAAAAGGAGATGAGATCTCGTCAGCACTAATCAAAGCCATTGAGGAGTCATATGTATCTATAGTCATCTTTTCAGAAGACTACGCTTCTTCAAAATGGTGCTTGAATGAACTTGTCAAGATTCTAGAATGCAAAAAAGACCAGGGACAAATTGTGATACCTATTTTCTACAAAGTAAATCCATCGCATGTGAAATTACAGATTGGGAGTTTCGGGCTAGGTTTCGTAAAACATGAACAATATTTAAAGTACAATAAAGTTAAGTTGCACAAATGGCAAGATGCTCTCAAAGAAGCAGCCGAGTTAGCTGGATGGCACTCCGAAAATTACCTGATTGAATTAGATTTCATCAAGGACATTGTTGAAGAGGTTGTTACACAATTGAATCGGAAACTCCCATCTGAAGTTAATAAGGAAATTGTTGGAATTGAGAAAAAGTATAAAGAGATTGAATTGTTACTGAAAATTGAATCAGCTGATGTGAGAACCCTTGGCTTATGGGGCATGGGTGGCATAGGGAAGACCACTCTAGCTGAATATGCATGTGTTAAACTGTCTTTTCAATTCGAACGTCGTTGTTTGTTGGACAATGTAACGAAAGTATCTAAAGAGTGCGGACCCTCAGGTTTACATAAACTTTGTCTTTCTAAATTGTTTGAGCTTCCACTTAATGAACCTTATGTCGAAACTCGAATTTCAGACAGAAGACTTGCAGGTGAAAAAAGTTTAATTGTGTTGGATGATGTAGCAACTTTAGAGCAAGCAGAAAATCTTAAAATGTGCTTGAGATCGGGTAGTAGAGTCATTGTCACAGCTAGAGACAAGCAAATATTTAGTCAGTTCAATGAATGTGAAATTTATGAGGTTAAAGGACTGAACGAAGATGACTCTATTCAACTATTCTGTTGGCATGCTTTCCAGAAAAAATATGCTCAAGTTGGATATGAAGAACTCTCAGAAAGGGCAATTGGGTATTGCGGAGGCAATCCTCTAGCTTTAAAAGTGTTAGGTGCAAATTTCCGTACAAAAAGCAAACAAGTGTGGGAAAGTGAACTGGAGAAGCTCAAAAAGATTCCTAATATGAGTATTCACAATGTGTTAAAATTGAGTTTCGATGACTTAGATCGTAAAGAACAGGACGTATTTCTAGACATTGTATGCTTCCTCAGCTTAAGATTTTCCAGTTTTGATTCTTATCATAAACGAGATTACCTAACAGTTCTATTCGATGCTTGCGAGTTTTATGCGGTATGTGGGATAGAAGCCCTCCTACGTAAAGCGCTCATTGcggttaatttttattatagtgGTGATATAATTAAAATGCATGATTTGTTAGTAGAAATGGGACGAGAGATTGTTAAGCAAGAATCTCCTGAAAACCCCGGAAGAAGAAGTAGATTGTGGGATTCTGAGGATGTGTATGATGTATTGAAATATAACAAGggaACTGAAGCtgttgaagttttattttttgatatttcCAAAATTGAGAATCTATCTTTGAGCTCTGATTCCTTTAAAAGCATGATCAACTTAAGATATCTTCATATCACCAGTTATACACACCTTCCTAAAGGTCTTGAGCAGTTGTCTGATAAATTGAGGCACCTTTATTGGGATCTATTTCCACTTGCGTCTTTGCCATCGTCCTTTTGTGCTGAAAATCTTGTTATACTTAGCATGCGACATAGCAAGCTTAGAAAGCTTTGGAATGGAGTTCAGAAGTTGGACAAATTAATTACTCTTGATCTATGTAACTTCAGAGACCTGATTGAGATCTCAGACCTATCAAGGGCACCAAATCTTCAAAAAGTGGATCTTTCTGGTTGTGTGAGTCTCCGTCAACTCCATCCATCCGTTTTCACTCGCCCCAAGCTTAGAGAACTATCTTTAATTGGTTGCAAATTTCTTGAGAATAGGCAGCGCAAGGATCCAATTGAAACGACGACGGTAGAGGTGTGCTATGGAATTCGACAAACTGTTTGTGATTTAGAAGGAATTGGCTTGGAGGTGGTGTTGTCTCAACCTGTTGAAGATTGTGAGGTGGGGAATTGCTCGTTGGTTCCTTGTTCTCTTGCGAGTAGGGGGGTGGTTGGCAACTCAATTGGATATATGTTAGCGGGGGAGCAACTGCCTCTAGCTCCAGGGGTGTCTATCCCAGGTACCTTGGTTGATAAAGAGAGAGGGGATGCTCATCATATTATTGATATTCAGGAAGATTTGGGGATGAACTTTCATGGGGAGGGTGATGAGGATGTGGTTAGAAGTATGGGGTATGAAGGAAGGGATAAACAGGAGAAGGCCGATTGGGTGAATGGTCAAGGTTATCAATGA 2523 0.3757 MTIQQTIDDSSSSSSSSSTVVSLKKYDVFINFHGEDTRKNFTSHLQAALSKEVITFIDENELEKGDEISSALIKAIEESYVSIVIFSEDYASSKWCLNELVKILECKKDQGQIVIPIFYKVNPSHVKLQIGSFGLGFVKHEQYLKYNKVKLHKWQDALKEAAELAGWHSENYLIELDFIKDIVEEVVTQLNRKLPSEVNKEIVGIEKKYKEIELLLKIESADVRTLGLWGMGGIGKTTLAEYACVKLSFQFERRCLLDNVTKVSKECGPSGLHKLCLSKLFELPLNEPYVETRISDRRLAGEKSLIVLDDVATLEQAENLKMCLRSGSRVIVTARDKQIFSQFNECEIYEVKGLNEDDSIQLFCWHAFQKKYAQVGYEELSERAIGYCGGNPLALKVLGANFRTKSKQVWESELEKLKKIPNMSIHNVLKLSFDDLDRKEQDVFLDIVCFLSLRFSSFDSYHKRDYLTVLFDACEFYAVCGIEALLRKALIAVNFYYSGDIIKMHDLLVEMGREIVKQESPENPGRRSRLWDSEDVYDVLKYNKGTEAVEVLFFDISKIENLSLSSDSFKSMINLRYLHITSYTHLPKGLEQLSDKLRHLYWDLFPLASLPSSFCAENLVILSMRHSKLRKLWNGVQKLDKLITLDLCNFRDLIEISDLSRAPNLQKVDLSGCVSLRQLHPSVFTRPKLRELSLIGCKFLENRQRKDPIETTTVEVCYGIRQTVCDLEGIGLEVVLSQPVEDCEVGNCSLVPCSLASRGVVGNSIGYMLAGEQLPLAPGVSIPGTLVDKERGDAHHIIDIQEDLGMNFHGEGDEDVVRSMGYEGRDKQEKADWVNGQGYQ 840
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g02498 840 Gene3D - 23 188 IPR035897 -
Tsu03g02498 840 SMART till_3 25 164 IPR000157 GO:0007165
Tsu03g02498 840 Gene3D - 189 349 IPR027417 -
Tsu03g02498 840 Gene3D Ribonuclease Inhibitor 539 711 IPR032675 -
Tsu03g02498 840 ProSiteProfiles TIR domain profile. 24 190 IPR000157 GO:0007165
Tsu03g02498 840 Pfam Leucine Rich Repeat 618 637 IPR011713 -
Tsu03g02498 840 Gene3D - 353 437 IPR042197 -
Tsu03g02498 840 Pfam NB-ARC domain 213 419 IPR002182 GO:0043531
Tsu03g02498 840 PRINTS Disease resistance protein signature 225 240 - -
Tsu03g02498 840 PRINTS Disease resistance protein signature 388 402 - -
Tsu03g02498 840 PRINTS Disease resistance protein signature 660 676 - -
Tsu03g02498 840 PRINTS Disease resistance protein signature 298 312 - -
Tsu03g02498 840 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 18 702 IPR044974 GO:0006952
Tsu03g02498 840 Pfam TIR domain 25 204 IPR000157 GO:0007165
Tsu03g02498 840 SUPERFAMILY "Winged helix" DNA-binding domain 425 541 IPR036390 -
Tsu03g02498 840 SUPERFAMILY L domain-like 554 699 - -
Tsu03g02498 840 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 18 702 - -
Tsu03g02498 840 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 184 447 IPR027417 -
Tsu03g02498 840 SUPERFAMILY Toll/Interleukin receptor TIR domain 15 167 IPR035897 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Tsu03g02498 Tsu-Chr3 29550819 29589832 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g02498 22 702 WRKY Transcription Factor Family AT4G12020 32.249 1.84e-82 288
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g02498 - - mtr:MTR_2g037140 798.119