LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu03g02498	ATGACTATTCAACAAACCATAgatgattcttcttcttcttcatcatcttcttctacAGTGGTATCTTTGAAAAAGTATGATGTTTTTATAAACTTTCACGGTGAGGATACTCGTAAAAATTTCACAAGCCATCTACAAGCTGCTCTGAGCAAAGAAGTTATAACCTTTATTGACGAAAATGAGCTTGAAAAAGGAGATGAGATCTCGTCAGCACTAATCAAAGCCATTGAGGAGTCATATGTATCTATAGTCATCTTTTCAGAAGACTACGCTTCTTCAAAATGGTGCTTGAATGAACTTGTCAAGATTCTAGAATGCAAAAAAGACCAGGGACAAATTGTGATACCTATTTTCTACAAAGTAAATCCATCGCATGTGAAATTACAGATTGGGAGTTTCGGGCTAGGTTTCGTAAAACATGAACAATATTTAAAGTACAATAAAGTTAAGTTGCACAAATGGCAAGATGCTCTCAAAGAAGCAGCCGAGTTAGCTGGATGGCACTCCGAAAATTACCTGATTGAATTAGATTTCATCAAGGACATTGTTGAAGAGGTTGTTACACAATTGAATCGGAAACTCCCATCTGAAGTTAATAAGGAAATTGTTGGAATTGAGAAAAAGTATAAAGAGATTGAATTGTTACTGAAAATTGAATCAGCTGATGTGAGAACCCTTGGCTTATGGGGCATGGGTGGCATAGGGAAGACCACTCTAGCTGAATATGCATGTGTTAAACTGTCTTTTCAATTCGAACGTCGTTGTTTGTTGGACAATGTAACGAAAGTATCTAAAGAGTGCGGACCCTCAGGTTTACATAAACTTTGTCTTTCTAAATTGTTTGAGCTTCCACTTAATGAACCTTATGTCGAAACTCGAATTTCAGACAGAAGACTTGCAGGTGAAAAAAGTTTAATTGTGTTGGATGATGTAGCAACTTTAGAGCAAGCAGAAAATCTTAAAATGTGCTTGAGATCGGGTAGTAGAGTCATTGTCACAGCTAGAGACAAGCAAATATTTAGTCAGTTCAATGAATGTGAAATTTATGAGGTTAAAGGACTGAACGAAGATGACTCTATTCAACTATTCTGTTGGCATGCTTTCCAGAAAAAATATGCTCAAGTTGGATATGAAGAACTCTCAGAAAGGGCAATTGGGTATTGCGGAGGCAATCCTCTAGCTTTAAAAGTGTTAGGTGCAAATTTCCGTACAAAAAGCAAACAAGTGTGGGAAAGTGAACTGGAGAAGCTCAAAAAGATTCCTAATATGAGTATTCACAATGTGTTAAAATTGAGTTTCGATGACTTAGATCGTAAAGAACAGGACGTATTTCTAGACATTGTATGCTTCCTCAGCTTAAGATTTTCCAGTTTTGATTCTTATCATAAACGAGATTACCTAACAGTTCTATTCGATGCTTGCGAGTTTTATGCGGTATGTGGGATAGAAGCCCTCCTACGTAAAGCGCTCATTGcggttaatttttattatagtgGTGATATAATTAAAATGCATGATTTGTTAGTAGAAATGGGACGAGAGATTGTTAAGCAAGAATCTCCTGAAAACCCCGGAAGAAGAAGTAGATTGTGGGATTCTGAGGATGTGTATGATGTATTGAAATATAACAAGggaACTGAAGCtgttgaagttttattttttgatatttcCAAAATTGAGAATCTATCTTTGAGCTCTGATTCCTTTAAAAGCATGATCAACTTAAGATATCTTCATATCACCAGTTATACACACCTTCCTAAAGGTCTTGAGCAGTTGTCTGATAAATTGAGGCACCTTTATTGGGATCTATTTCCACTTGCGTCTTTGCCATCGTCCTTTTGTGCTGAAAATCTTGTTATACTTAGCATGCGACATAGCAAGCTTAGAAAGCTTTGGAATGGAGTTCAGAAGTTGGACAAATTAATTACTCTTGATCTATGTAACTTCAGAGACCTGATTGAGATCTCAGACCTATCAAGGGCACCAAATCTTCAAAAAGTGGATCTTTCTGGTTGTGTGAGTCTCCGTCAACTCCATCCATCCGTTTTCACTCGCCCCAAGCTTAGAGAACTATCTTTAATTGGTTGCAAATTTCTTGAGAATAGGCAGCGCAAGGATCCAATTGAAACGACGACGGTAGAGGTGTGCTATGGAATTCGACAAACTGTTTGTGATTTAGAAGGAATTGGCTTGGAGGTGGTGTTGTCTCAACCTGTTGAAGATTGTGAGGTGGGGAATTGCTCGTTGGTTCCTTGTTCTCTTGCGAGTAGGGGGGTGGTTGGCAACTCAATTGGATATATGTTAGCGGGGGAGCAACTGCCTCTAGCTCCAGGGGTGTCTATCCCAGGTACCTTGGTTGATAAAGAGAGAGGGGATGCTCATCATATTATTGATATTCAGGAAGATTTGGGGATGAACTTTCATGGGGAGGGTGATGAGGATGTGGTTAGAAGTATGGGGTATGAAGGAAGGGATAAACAGGAGAAGGCCGATTGGGTGAATGGTCAAGGTTATCAATGA	2523	0.3757	MTIQQTIDDSSSSSSSSSTVVSLKKYDVFINFHGEDTRKNFTSHLQAALSKEVITFIDENELEKGDEISSALIKAIEESYVSIVIFSEDYASSKWCLNELVKILECKKDQGQIVIPIFYKVNPSHVKLQIGSFGLGFVKHEQYLKYNKVKLHKWQDALKEAAELAGWHSENYLIELDFIKDIVEEVVTQLNRKLPSEVNKEIVGIEKKYKEIELLLKIESADVRTLGLWGMGGIGKTTLAEYACVKLSFQFERRCLLDNVTKVSKECGPSGLHKLCLSKLFELPLNEPYVETRISDRRLAGEKSLIVLDDVATLEQAENLKMCLRSGSRVIVTARDKQIFSQFNECEIYEVKGLNEDDSIQLFCWHAFQKKYAQVGYEELSERAIGYCGGNPLALKVLGANFRTKSKQVWESELEKLKKIPNMSIHNVLKLSFDDLDRKEQDVFLDIVCFLSLRFSSFDSYHKRDYLTVLFDACEFYAVCGIEALLRKALIAVNFYYSGDIIKMHDLLVEMGREIVKQESPENPGRRSRLWDSEDVYDVLKYNKGTEAVEVLFFDISKIENLSLSSDSFKSMINLRYLHITSYTHLPKGLEQLSDKLRHLYWDLFPLASLPSSFCAENLVILSMRHSKLRKLWNGVQKLDKLITLDLCNFRDLIEISDLSRAPNLQKVDLSGCVSLRQLHPSVFTRPKLRELSLIGCKFLENRQRKDPIETTTVEVCYGIRQTVCDLEGIGLEVVLSQPVEDCEVGNCSLVPCSLASRGVVGNSIGYMLAGEQLPLAPGVSIPGTLVDKERGDAHHIIDIQEDLGMNFHGEGDEDVVRSMGYEGRDKQEKADWVNGQGYQ	840

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu03g02498	840	Gene3D	-	23	188	IPR035897	-
	Tsu03g02498	840	SMART	till_3	25	164	IPR000157	GO:0007165
	Tsu03g02498	840	Gene3D	-	189	349	IPR027417	-
	Tsu03g02498	840	Gene3D	Ribonuclease Inhibitor	539	711	IPR032675	-
	Tsu03g02498	840	ProSiteProfiles	TIR domain profile.	24	190	IPR000157	GO:0007165
	Tsu03g02498	840	Pfam	Leucine Rich Repeat	618	637	IPR011713	-
	Tsu03g02498	840	Gene3D	-	353	437	IPR042197	-
	Tsu03g02498	840	Pfam	NB-ARC domain	213	419	IPR002182	GO:0043531
	Tsu03g02498	840	PRINTS	Disease resistance protein signature	225	240	-	-
	Tsu03g02498	840	PRINTS	Disease resistance protein signature	388	402	-	-
	Tsu03g02498	840	PRINTS	Disease resistance protein signature	660	676	-	-
	Tsu03g02498	840	PRINTS	Disease resistance protein signature	298	312	-	-
	Tsu03g02498	840	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	18	702	IPR044974	GO:0006952
	Tsu03g02498	840	Pfam	TIR domain	25	204	IPR000157	GO:0007165
	Tsu03g02498	840	SUPERFAMILY	"Winged helix" DNA-binding domain	425	541	IPR036390	-
	Tsu03g02498	840	SUPERFAMILY	L domain-like	554	699	-	-
	Tsu03g02498	840	PANTHER	RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED	18	702	-	-
	Tsu03g02498	840	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	184	447	IPR027417	-
	Tsu03g02498	840	SUPERFAMILY	Toll/Interleukin receptor TIR domain	15	167	IPR035897	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu03g02498	Tsu-Chr3	29550819	29589832	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu03g02498	22	702	WRKY Transcription Factor Family	AT4G12020	32.249	1.84e-82	288

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu03g02498	-		-	mtr:MTR_2g037140	798.119