Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g02490 ATGGAAGAATCTCCATCATTGTGTGTGAAAGACTCATTGGATTATCAAGGTTCATTGGATGGATTCAACAAAATGCTAAGTTCTTTGATGGTGGATCTTGTAACACAAGTAAGTGAAACTTCAATAGGAAAAAATGCTACCAAATATGTTCTTaagaaatcaattttctttgagGATAAATTCTTGTATGGAATTGCTCAGTGCATACCAGATATCTCTAATGATAACTGCATGAAGTGTTTAAAGGATGCTATTGATTATCTTCAAACTTCATGTGCTAGAGGAAAGATTAGAGGAAGTGTTTTATATCCAAGTTGTATTGTTAGATATGATCCTTCTCCATTTTTTGCACAACCTAGAGcaataaagaaaaatggACCAGAcctaaatttcatattttttcatattatttttcctCTCGCGATTTTCTCTGTCGCGGTATTCCTTTTCGCATATTATCTGCTATGTAGGAGAGCGAGGAAGAATCTCAAGTACCACAAAGAAAATTTTGGGGAAGATATTTCATCAGAAGTAAACACTTTGcaatttgatttcaatatgaTTCGACTAGCGACAAACAAGTTCTCTGAGGATAACAAGATAGGAGAAGGTGGTTTCGGAGATGTTTATAAGGGAATGTTTCCTAATGGATTTGAAATAGCAGTGAAGAGGCTGATAAGAAATTCAAGTCAAGGAGCTTTGGAATTTAAGAATGAAGTGTTATTAATAGCCAAACTTCAACACAGAAATCTTGTGAGATTGTTAGGATTTTGCATTCAAAGGAATGAGAAGATACTAATTTATGAATATATGCACAACAAAAGCCTTGATTATTACCTATTCAGCCCtgaaaaccataaaaaattaacttggCATGCACGTTACAAGATTATAAGAGGAATTGCGCGAGGTATTCTTTATCTGCATGAGGATTCTCATCTAAAAATCATACACTGTGATCTTAAACCCAGCAACATTTTGTTGGATGACAAAATGAATGCAAAGATATCAGATTTTGGTTTGGCAAGGATTGTTGCCATTGATCAAATGCAAGGAAATACTAGTATAATTGCTGGAACATATGGTTACATGTCTCCCGAATATGCAATGCTTGGCCAATTTTCTGAGAAATCTGATGTATTCAGCTTTGGAGTTATAATTCTTGAGATTGTTAGTGGAAAAAGAAATGTCGATTATAATGGAGTAAATTCCATTGATGACCTCGTGAGCCATGCATGGAAGAAATGGAGGGAAAATAAGGAATTGGAATTATTAGATGCTGCATTGACATACTCATTTTCAGAAACAGAAGTATATAGATGCATCCAAATTGGTCTACTATGTGTGCAAGAAAATCCAGATCAGAGACCAACTATGGCAACAATTGCTTTGTATTTCAACTGTGATTCAATAGATCTACCATGTCCTCAACAGCCACCATTTTACATGCGTGGAAAAATAGAATCAAGGGTGGCTAGTAAAATAGCAATGTCAGGTAGACCTAGGAGTTATTCAGTTACAAGGTTTTAA 1530 0.3307 MEESPSLCVKDSLDYQGSLDGFNKMLSSLMVDLVTQVSETSIGKNATKYVLKKSIFFEDKFLYGIAQCIPDISNDNCMKCLKDAIDYLQTSCARGKIRGSVLYPSCIVRYDPSPFFAQPRAIKKNGPDLNFIFFHIIFPLAIFSVAVFLFAYYLLCRRARKNLKYHKENFGEDISSEVNTLQFDFNMIRLATNKFSEDNKIGEGGFGDVYKGMFPNGFEIAVKRLIRNSSQGALEFKNEVLLIAKLQHRNLVRLLGFCIQRNEKILIYEYMHNKSLDYYLFSPENHKKLTWHARYKIIRGIARGILYLHEDSHLKIIHCDLKPSNILLDDKMNAKISDFGLARIVAIDQMQGNTSIIAGTYGYMSPEYAMLGQFSEKSDVFSFGVIILEIVSGKRNVDYNGVNSIDDLVSHAWKKWRENKELELLDAALTYSFSETEVYRCIQIGLLCVQENPDQRPTMATIALYFNCDSIDLPCPQQPPFYMRGKIESRVASKIAMSGRPRSYSVTRF 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g02490 509 ProSitePatterns Protein kinases ATP-binding region signature. 201 223 IPR017441 GO:0005524
Tsu03g02490 509 Gene3D Phosphorylase Kinase; domain 1 157 270 - -
Tsu03g02490 509 Pfam Protein tyrosine and serine/threonine kinase 198 463 IPR001245 GO:0004672|GO:0006468
Tsu03g02490 509 Gene3D Transferase(Phosphotransferase) domain 1 271 470 - -
Tsu03g02490 509 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 136 489 - -
Tsu03g02490 509 ProSitePatterns Serine/Threonine protein kinases active-site signature. 316 328 IPR008271 GO:0004672|GO:0006468
Tsu03g02490 509 SMART serkin_6 195 466 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g02490 509 SUPERFAMILY Protein kinase-like (PK-like) 179 484 IPR011009 -
Tsu03g02490 509 ProSiteProfiles Protein kinase domain profile. 195 466 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g02490 509 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 5 123 - -
Tsu03g02490 509 Pfam Salt stress response/antifungal 19 111 IPR002902 -
Tsu03g02490 509 CDD STKc_IRAK 201 463 - -
Tsu03g02490 509 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 136 489 - -
Tsu03g02490 509 ProSiteProfiles Gnk2-homologous domain profile. 3 115 IPR002902 -
Tsu03g02490 509 Gene3D - 8 115 IPR038408 -
Tsu03g02490 509 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 5 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g02490 Tsu-Chr3 29453649 29456293 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g02490 22 490 Receptor kinase-like Gene Family AT4G05200 46.951 1.68e-150 444
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Tsu03g02490 PK_Tyr_Ser-Thr 2.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g02490 - - mtr:MTR_3g079850 877.47