Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g02472 ATGCGTTTCAAGTGCAAAGTTACAATTGATGGACAAACCTTTGAGAGTCCTAAGTTTTATTCGACATTGAAGGAAGCTGAACATGCAGCAGCTGAAAATGCTTTGACATCATTATCACCAAGTGGAATTGAAGAGGATGAAATTGTGGTATACAAGAATCTTTTGCAAGAATTAGCTCAAAAGGAAGGATTGAAGTTGCCTGTATATACCACAGCCGGAGATACTCACCTAGGAGGAGAGGACTTTGATAACAGAATGGTGAGTTATTTAGTGAAGGAAttcaagaagaaaaataaagtggATATTAGTGGGAACCCGAAGGCACTAAGGAGATTGAGAACTGCTTGCGAAAGGGCTAAAAGGACACTTTCATTTGTCACTGAGGCAATAATTGACATAGATGCTATATACGAGGGAATTGACTTCTATTTGTTAGTCACTCGGGCCAAGTTTGAGCAACTCAACATGGATCTCTTTGAAAAGTGTTTGGAGACTGTTAAGAGTTGTTTTAGTGATGCTAAGATGGACAAACGTAGTATAGATGATGTTCTACTTGTTGGTGGATCTTCTAGGATTCCTAAAGTGCAGCAACTTTTGCAGGAATTTTTTGAAGGCAAGGATCTGTATAGTAGCATCAACTCGGATGAGGCTGTTGCTTATGGAGCAGCAGTTCAGGCTGCTTTGCTGAGTGAAGGCGTTAATTATAAGAATGTTCCAAACTTGGTGCTGCAAGATGTTACCCCTTTGTCACTTGGTATGGAGATAAAAGGAGATGTCATGGATGTGGTGATTCCTAGAAACACCTCCATTCCTGTTAAGAAAACAATAGAGTATATTACAATTGAAGATGACCAATCTGCTGTCACAATTAAGGTTTATGAGGGTGAGAGAATGATTGCGAGTGAGAACAACCTGCTTGGTTCGTTTGATATGGCTGTTCGTCGTGCACCTCGTGGACTTCCTATCCAGGTATGCTTCACTATAGATGCTGATGGTATATTATATGTGTCTTCTGAGGAAGAAAGCAGTGGTAACAAGAAAGATATTACAATAACGAATGAAAAGGGAAGATTGTCAAGGAAAGAAATAAAGAGAATGATACAAGAAGCTGAGGACTTCAAGTCTGATGACATGAAGCATATGAAGAAGGTTAGAGCCGTGAATGCTTTGGATGATTATCTTTATGATATGAAGAAAGTTATGAAAGATAAATGTGTAGCTTCCAAGCTCAGTTTTGTAGACATATTGAAGATCAGTTCTGCAATGATAAAGGGTAAAGAATTGATTgatggaaaagagaaaaatgacacATTTGTGTTTGTGGACTGTTTGAGGGAGATTAAGAGCACATTTCAATCTGCTTTCAACAAGTTCTGA 1377 0.3762 MRFKCKVTIDGQTFESPKFYSTLKEAEHAAAENALTSLSPSGIEEDEIVVYKNLLQELAQKEGLKLPVYTTAGDTHLGGEDFDNRMVSYLVKEFKKKNKVDISGNPKALRRLRTACERAKRTLSFVTEAIIDIDAIYEGIDFYLLVTRAKFEQLNMDLFEKCLETVKSCFSDAKMDKRSIDDVLLVGGSSRIPKVQQLLQEFFEGKDLYSSINSDEAVAYGAAVQAALLSEGVNYKNVPNLVLQDVTPLSLGMEIKGDVMDVVIPRNTSIPVKKTIEYITIEDDQSAVTIKVYEGERMIASENNLLGSFDMAVRRAPRGLPIQVCFTIDADGILYVSSEEESSGNKKDITITNEKGRLSRKEIKRMIQEAEDFKSDDMKHMKKVRAVNALDDYLYDMKKVMKDKCVASKLSFVDILKISSAMIKGKELIDGKEKNDTFVFVDCLREIKSTFQSAFNKF 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g02472 458 Gene3D - 210 227 - -
Tsu03g02472 458 Pfam Double-stranded RNA binding motif 1 38 IPR014720 -
Tsu03g02472 458 PANTHER HEAT SHOCK PROTEIN 70KDA 67 457 IPR013126 GO:0005524|GO:0140662
Tsu03g02472 458 SUPERFAMILY Actin-like ATPase domain 60 229 IPR043129 -
Tsu03g02472 458 ProSitePatterns Heat shock hsp70 proteins family signature 3. 183 197 IPR018181 -
Tsu03g02472 458 PANTHER HEAT SHOCK 70 KDA PROTEIN 67 457 - -
Tsu03g02472 458 SUPERFAMILY dsRNA-binding domain-like 2 38 - -
Tsu03g02472 458 Gene3D Actin; Chain A, domain 4 79 161 - -
Tsu03g02472 458 PRINTS 70kDa heat shock protein signature 319 335 - -
Tsu03g02472 458 PRINTS 70kDa heat shock protein signature 180 196 - -
Tsu03g02472 458 PRINTS 70kDa heat shock protein signature 240 259 - -
Tsu03g02472 458 PRINTS 70kDa heat shock protein signature 212 232 - -
Tsu03g02472 458 Pfam Hsp70 protein 65 436 IPR013126 GO:0005524|GO:0140662
Tsu03g02472 458 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 237 391 IPR029047 -
Tsu03g02472 458 Gene3D - 65 209 - -
Tsu03g02472 458 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1 40 IPR014720 -
Tsu03g02472 458 Gene3D - 1 43 - -
Tsu03g02472 458 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 228 409 IPR029047 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g02472 Tsu-Chr3 29189869 29192284 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g02472 58 449 Calmodulin-binding Proteins AT3G12580 58.883 2.86e-159 463