Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g02470 ATGTTAGGGTGGATGGACACAGCTTCATTTAAGGACAGTCAGAACGTAATCACGAAACATTGGAAAGACCTTAAAAGTATGAAGGAGGAAGACGTCGATTGGCAGCCTTATATGCTGCCCGAGCGTACTGTCACGTTGCCTCCAGATCGCACGAGTCAGTTATGGATGATATATGCATGTGTCCCATGCATATGTTTTGACGCCGTCACAATTAATCGCACAGATCTATGTTTTAAGCAATTAGGATTGGTATACCTTGACTATAATAATCAATGGAGGAGACGAAATATTTCTATTGTGAAGAGAGATTTTCAGTTTGACGGGCAACTTATAAATGATACAACAGAGCagGTTCTAGAGACCGCAAGCCCCACCCACCATGTCCACCATGTCGATGATGAAGCAACTGAGAAGAGGCTATCAGCTAGCGTACTGAATTGCGGTAGAGGAAAGGTTTTGCTTGATCCCAATGAAGTCAATGATATCTCCTTGGCCAATTTCAGACAAAACATTAGGAAGTTGGTTAAGGATGGGTTTATTATGAAGAAGCCAACTAAGATTCACTCCTGTTCACGTAGCAAAATctgTCACACTCTATTCCTTAAGGGTTTAAATGTCAACATTCACCCTCCTAAGCTTTTAGGAACTAAAGAGATTATTTGGCTTCCTCCTTTGCCTCTTTGGGTGAAATGCAACACCGATGGTGCCTCTACCTCTATATCTTCTTCTTGTGGAGGGATTTTTCGTAACAGCGAAGCTGACTTCATGTGTGCTTTTGCTGACAACCTGGGGGTTGGTTCAGCCTTCAATGCTGAATTGATCGGTGCTATGAATACTATTGAACTTGCTAATAGCAAACATTGGTCGAATCTTTGGCTTGAGACTGATTCTGTTTTGGTTGTGAAAGCTTTTACGAATCCTGGGTTGATACCTTGGAATCTTAGCAATAGGTGGTTGAATTGTATTGCTCTCACTAGTGTCCCATATTTGTAG 993 0.4159 MLGWMDTASFKDSQNVITKHWKDLKSMKEEDVDWQPYMLPERTVTLPPDRTSQLWMIYACVPCICFDAVTINRTDLCFKQLGLVYLDYNNQWRRRNISIVKRDFQFDGQLINDTTEQVLETASPTHHVHHVDDEATEKRLSASVLNCGRGKVLLDPNEVNDISLANFRQNIRKLVKDGFIMKKPTKIHSCSRSKICHTLFLKGLNVNIHPPKLLGTKEIIWLPPLPLWVKCNTDGASTSISSSCGGIFRNSEADFMCAFADNLGVGSAFNAELIGAMNTIELANSKHWSNLWLETDSVLVVKAFTNPGLIPWNLSNRWLNCIALTSVPYL 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g02470 330 SMART Ribosomal_L19e_2 133 264 IPR000196 GO:0003735|GO:0005840|GO:0006412
Tsu03g02470 330 Pfam Ribosomal protein L19e 136 196 IPR000196 GO:0003735|GO:0005840|GO:0006412
Tsu03g02470 330 Pfam Reverse transcriptase-like 232 306 IPR002156 GO:0003676|GO:0004523
Tsu03g02470 330 SUPERFAMILY Ribosomal protein L19 (L19e) 135 207 IPR035970 GO:0003735|GO:0005840|GO:0006412
Tsu03g02470 330 PANTHER RIBOSOMAL PROTEIN L19 137 203 - -
Tsu03g02470 330 CDD RNase_H_like 231 325 IPR044730 -
Tsu03g02470 330 Gene3D - 228 326 IPR036397 GO:0003676
Tsu03g02470 330 Gene3D - 135 186 IPR015972 GO:0003735|GO:0005840|GO:0006412
Tsu03g02470 330 PANTHER 60S RIBOSOMAL PROTEIN L19 137 203 IPR039547 GO:0003723|GO:0003735|GO:0022625
Tsu03g02470 330 SUPERFAMILY Ribonuclease H-like 228 318 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g02470 Tsu-Chr3 29173532 29177829 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g02470 137 228 Cytoplasmic Ribosomal Protein Gene Family AT1G02780 57.609 2.77e-26 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g02470 K02885 - rcn:112171359 110.153