Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g02464 ATGAAAAGGTTCAATAACTCAGAATCTATGTCTTCTTTGTTTTCCATGTACCAATCCAAAGGGGTGGATAAGAGGAATGAAACAAAAGGTTATAGTGAAGAATTTCAAGCAATGTTAGATAGATTGGAGCAAGAAGATAGTTATGAAGATGGTAGCTTAATGTTGGAGAAGAAAAGAAGACTTGGTCATGATCAAGTAAAAGCCTTAGAAAAGAGTTTTGAGTTGGATAACAAGTTAGAGCCAGAGAGAAAAGTTAAGTTAGCTGAAGAATTAGGTTTGCAACCTAGACAAGTTTCAATTTGGTTCCAAAATCGTCGAGCTCGTTCGAAAACCAAACAATTAGAAAGAGATTATGGTGTACTTAAGTCCAATTTTGATGTTCTTAAAGTTGAATATAGTAATCTTCAACAAGAGAATGAAGCACTTACCATAAAGTTAAGAGAGTTGAAAGCAAAATTGTTAAGAGTTGAAAATAATGAGTTAGAGAAAGAAGAATGTCAAATTTCAAGAGGTAGAGAAAGAGGAGGTTCAGAAAGTAATTCAAGTGGTGTGATTAAAGAAGAAATTAGTAATGTTGATTCTCCTTTGTGTTTCAATGGATCTTTGCCAACTTCAATGATAAACTTAGTTCATTATTATGATTCCAAAGGGTCACCTGAGAGAGCTTTTCAGAATCACTTTATGAGAATGGAGGAACAAAATTTCTTTAGTAATAGCGAATTATGCAATTTCTTTTCTGTTGATCAATCTCCTACTTTGTAA 762 0.3294 MKRFNNSESMSSLFSMYQSKGVDKRNETKGYSEEFQAMLDRLEQEDSYEDGSLMLEKKRRLGHDQVKALEKSFELDNKLEPERKVKLAEELGLQPRQVSIWFQNRRARSKTKQLERDYGVLKSNFDVLKVEYSNLQQENEALTIKLRELKAKLLRVENNELEKEECQISRGRERGGSESNSSGVIKEEISNVDSPLCFNGSLPTSMINLVHYYDSKGSPERAFQNHFMRMEEQNFFSNSELCNFFSVDQSPTL 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g02464 253 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-6 5 239 - -
Tsu03g02464 253 Coils Coil 125 174 - -
Tsu03g02464 253 Gene3D - 51 118 - -
Tsu03g02464 253 SUPERFAMILY Homeodomain-like 57 123 IPR009057 -
Tsu03g02464 253 ProSiteProfiles 'Homeobox' domain profile. 52 112 IPR001356 GO:0003677
Tsu03g02464 253 PRINTS Lambda-repressor HTH signature 83 92 IPR000047 GO:0003677
Tsu03g02464 253 PRINTS Lambda-repressor HTH signature 92 108 IPR000047 GO:0003677
Tsu03g02464 253 SMART HOX_1 55 116 IPR001356 GO:0003677
Tsu03g02464 253 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 5 239 IPR045224 GO:0003700
Tsu03g02464 253 MobiDBLite consensus disorder prediction 165 185 - -
Tsu03g02464 253 CDD homeodomain 57 113 IPR001356 GO:0003677
Tsu03g02464 253 Pfam Homeobox associated leucine zipper 112 153 IPR003106 GO:0006355|GO:0043565
Tsu03g02464 253 Pfam Homeodomain 57 110 IPR001356 GO:0003677
Tsu03g02464 253 ProSitePatterns 'Homeobox' domain signature. 87 110 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g02464 Tsu-Chr3 28935122 28936566 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g02464 20 153 Homeobox Transcription Factor Family AT5G65310 60.690 6.40e-50 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Tsu03g02464 Homeodomain 5.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g02464 K09338 - qsu:111985016 246.514