Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g02460 ATGGATGAAGAGATTGAAGTTTCACCATTTTTCCTCTGTCCTATTTCATTACAACTCATGAAAGATCCAGTTACTGTCTCAACAGGCATAACCTACGACAGAGAAGCCATTGAAAAATGGTTATTTTCATCTCAAAACAAAACATGTCCTGTCACTAAACAACAACTCacacatgatgatgatgatgatctcATTATTCTCACACCAAACCATACTCTTCGAAGACTCATTCAAGCATGGTGTAGCATTAACACTTCTTATGGAATCCAAAGGATTCCAACTCCAAaaccaccaacaacaaaaacCCTTATAGAAAAACACCTCAAAGCTTCTGATTCTCCTCATTTGCTTATTCAATCTCTCAAAAACCTCAAAACAATTGCGTCCGAGAGCGAAACGAATCGAAGGTGTATCGAATCGGCTGGTGCTGTAGAGTTCTTAGCATCAATAGtaacaaaaaacaacacaaattctTCATGTTCAACAGAATTTGCCTTCGATGATGACGATGATGCAGAAGACGAAGCTATTTACATCCTTTACAATCTTCATTTAACAGAACAAGGTTTGATAACTCTCATAAACTTCAAAAATGGAGAATTTTTAGACTCTTTATTGAGATTATTGCAAAAGGGTAACTACGATTCAAGAACATATTCAGTTTTTCTGTTGAAATCTATGTCAAAAGTTGCTGAACCAACAAAACTAGCGAATCTAAAGACCGAGTTTTTCTTCGAATTAGTCCAGCTTCTCAAAGATCAGATATCAAAAAAGGCATCAAAAGCAACACTAGAAACACTGATTCAACTCGTCGAATTCGGAAGAAACAGAATAAGAGCAGTGGAATCAGGTTGTGTTACTGTTTTGATAGAACTTCTTCTTGATTGCAAAGAAAGAAAGCCATGTGAGATGATTTTGGTGCTATTAGAGATGTTATGTCAATGTGCTGATGGAAGATTAGAGCTATTAAAACATGGTTGTGGTTTAGCTATTGTTTCAAAGAAGATTCTAAGGGTTTCAACCTTAGCTAATGATAGAGCAGTGAGGATTCTTCTATCTGTTTCAAGATTTTCTGCTACACATTTAGTTGTTCAAGAAATGTTGCAAATAGGTGTTGTTGCTAAGCTTTGTTTGGTTCTTCAAGTTGATAGTGGAAATAAGGCTAAGGAGAAAGCAAGAGAGATACTTAAATTGCATGCAAAGTCTTGGAGTAATTCTCATTGCATACCTTTTAATTTACTTGCTTCATACCCATCAAGTGGGTGA 1266 0.342 MDEEIEVSPFFLCPISLQLMKDPVTVSTGITYDREAIEKWLFSSQNKTCPVTKQQLTHDDDDDLIILTPNHTLRRLIQAWCSINTSYGIQRIPTPKPPTTKTLIEKHLKASDSPHLLIQSLKNLKTIASESETNRRCIESAGAVEFLASIVTKNNTNSSCSTEFAFDDDDDAEDEAIYILYNLHLTEQGLITLINFKNGEFLDSLLRLLQKGNYDSRTYSVFLLKSMSKVAEPTKLANLKTEFFFELVQLLKDQISKKASKATLETLIQLVEFGRNRIRAVESGCVTVLIELLLDCKERKPCEMILVLLEMLCQCADGRLELLKHGCGLAIVSKKILRVSTLANDRAVRILLSVSRFSATHLVVQEMLQIGVVAKLCLVLQVDSGNKAKEKAREILKLHAKSWSNSHCIPFNLLASYPSSG 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g02460 421 Pfam U-box domain 8 82 IPR003613 GO:0004842|GO:0016567
Tsu03g02460 421 CDD RING-Ubox_PUB 11 54 IPR045210 -
Tsu03g02460 421 Gene3D - 96 407 IPR011989 -
Tsu03g02460 421 ProSiteProfiles U-box domain profile. 6 87 IPR003613 GO:0004842|GO:0016567
Tsu03g02460 421 SUPERFAMILY ARM repeat 60 382 IPR016024 -
Tsu03g02460 421 PANTHER WDSAM1 PROTEIN 3 419 IPR045185 GO:0061630
Tsu03g02460 421 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 91 IPR013083 -
Tsu03g02460 421 SUPERFAMILY RING/U-box 4 86 - -
Tsu03g02460 421 SMART Ubox_2 10 80 IPR003613 GO:0004842|GO:0016567
Tsu03g02460 421 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB23 3 419 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g02460 Tsu-Chr3 28753385 28754650 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g02460 1 418 U-box Gene Family AT2G35930 53.191 1.64e-157 449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g02460 - - adu:107471540 542.732