Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g02456 ATGAAAGGAACGACCAGTTTGATATCATTGTTATCACTCTCCCGCCACCGTATTCTTCACTCACAATGCCGTTTGTTCAATTCTTCTTCCTCACCATTATCATCACCTTCCTCTAACAAGCTATTCGTAGGAGGACTATCATGGTCATTTGATGAAAAATCTCTCAAACATGCTTCCTCTTCCTTTGGAGATGTCACTGAAGTGACGATAGTGTATGATAAAGACAGTGGTAGAGCTAGAGGATTTGGGTTTGTCATCTTTTCAAATGAAGATGATGCAAAATCTGCAAAAGATGCTATGGACGGAAAGGTGTTGTTAGGTAGACCATTGAGGATAAATTTTGCTCTCGAGAAAGCCCGTGGTGGACCTTTTGTAGTTCCTCGGTATTTAGATAACGGACGCTTTAACAGGCACTGA 417 0.4125 MKGTTSLISLLSLSRHRILHSQCRLFNSSSSPLSSPSSNKLFVGGLSWSFDEKSLKHASSSFGDVTEVTIVYDKDSGRARGFGFVIFSNEDDAKSAKDAMDGKVLLGRPLRINFALEKARGGPFVVPRYLDNGRFNRH 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g02456 138 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 41 111 IPR000504 GO:0003723
Tsu03g02456 138 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 4, MITOCHONDRIAL 14 135 - -
Tsu03g02456 138 SMART rrm1_1 40 113 IPR000504 GO:0003723
Tsu03g02456 138 Gene3D - 20 121 IPR012677 -
Tsu03g02456 138 PANTHER TRANSFORMER-2-RELATED 14 135 - -
Tsu03g02456 138 SUPERFAMILY RNA-binding domain, RBD 24 123 IPR035979 GO:0003676
Tsu03g02456 138 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 39 117 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g02456 Tsu-Chr3 28585850 28586446 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g02456 37 118 C2H2 Transcription Factor Family AT2G19380 35.366 8.14e-12 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g02456 - - gmx:100810104 179.104