Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g02425 ATGGAAGAcattaatcacttattttttcaatgcaATGTTTATCGCAAGTTATGGCAATTGGTTTCAAAATGGATTGGTGGAGAATTTGTATGCCACGGTTTCTTGAGGGAACACGCGGTTCAGTTCCGTGATCTGGGAGGTGATTCCAAAGGTTCCAGAGTTTTGTCCACTATTATCTGGATATCGGTTCTTTGTGTAATTTGGAAGGACCGAAATGTTAAGATCTTTCAGTCTGTTTTGGTCGAAGTTGACACTTTATTGGAAAAGGTCAAGCTTCAAACTTACTGGTGGCTGAAGTCATATTATAAGCTCTTTGATGTCGACTATTCTTTGTGGCGACTGAATCCTTTATTTTGCATACAGACTATTGTagcctATGCTTCCTCCGAGAAATGGTTTGTGAAACATCTCGAGAGCAACAATAGTCACAAAGTGTTCAATTGGAGAAGTGCTCTCACACAGGCAGCTAATTTGGCTGGTTGTCATTTTTTTGAACTAGTGGCTGGTTGTCATTTTAAAACTTCCAGGACTGAATCCCAATTCATTAAAGACATTGTTCAAGATATTTTGCAAAGATTGAACCTCATACACCAAATTGAATTGAGGGGAGTGGTTGGAATTGAGGAAAATTGTGAAGGAGTTAAATCATTATTGAAAATGGACTCAAGAGAAGTTCAAGTGATTGGTATATGGGGCATGGGTGGCATAGAGCTGTTAGAGGATGCAAATCTCTATGTTAGAATACCCAAAGTTGAATATCATTTTGTCATGAATAGGCTTAGAtgtaaaaaatttcttattgTTTTGGATGACGTTGCTACCCCAGAACGATTAGATGATCTAATAAGTGATTACAAATGTTTGGGACTTGGAAGTAGAGTGATTGTAACCACTAGAGATAAGCGCATATTTAACCATgttgataaaatatatgaggtcaaaaaattgaacaaagaTGACTCTCTTGAGCTTTTCTGTTTGAATGCATTCAAAGAAAAACATCCTAAAAGTGCATATAAAGAGCTCTCGGAAAATGTAATTGCCTATTGCAAGGGAAATCCTTTGGCTTTAAGAGTTTTAGGTGCCCGTCTTCGTTCAAGAAGTAAAGACGAGTGGAAAATTGAATTGGAAAAAATCAAGAAGATTCCAGACATGAAAATTCAGAATGTGTTGAAATTGAGTTATGATGACTTAGACAGTgatcaacaaaatatatttttagacaTAGCATGCTTTTTCAAAGAAGAATCAAGAGATCGTGTGACAAATCTATTGAAAGCTTGTGGTTTCCACCCAGGGATTCGAGACCCTGTAGAAAAGTCCCTTATAACAATTTCAAATAAGGGTACGATAGAAATGCATGACTTAATACAAGAAATGTGCTGGAATATTGTTCATCAAGAATCCCCTAAAGGCCCTGGAAGTAGAAGTCGATTGTGGGATCCCAATGAAGTGTATGCTGTACTAAAATATAATAAGGGACTAAAGCTGTTGAAGGAATAA 1503 0.3493 MEDINHLFFQCNVYRKLWQLVSKWIGGEFVCHGFLREHAVQFRDLGGDSKGSRVLSTIIWISVLCVIWKDRNVKIFQSVLVEVDTLLEKVKLQTYWWLKSYYKLFDVDYSLWRLNPLFCIQTIVAYASSEKWFVKHLESNNSHKVFNWRSALTQAANLAGCHFFELVAGCHFKTSRTESQFIKDIVQDILQRLNLIHQIELRGVVGIEENCEGVKSLLKMDSREVQVIGIWGMGGIELLEDANLYVRIPKVEYHFVMNRLRCKKFLIVLDDVATPERLDDLISDYKCLGLGSRVIVTTRDKRIFNHVDKIYEVKKLNKDDSLELFCLNAFKEKHPKSAYKELSENVIAYCKGNPLALRVLGARLRSRSKDEWKIELEKIKKIPDMKIQNVLKLSYDDLDSDQQNIFLDIACFFKEESRDRVTNLLKACGFHPGIRDPVEKSLITISNKGTIEMHDLIQEMCWNIVHQESPKGPGSRSRLWDPNEVYAVLKYNKGLKLLKE 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g02425 500 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 127 236 IPR044974 GO:0006952
Tsu03g02425 500 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 238 496 IPR044974 GO:0006952
Tsu03g02425 500 Gene3D - 120 198 IPR035897 -
Tsu03g02425 500 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 127 236 - -
Tsu03g02425 500 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 238 496 - -
Tsu03g02425 500 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 193 409 IPR027417 -
Tsu03g02425 500 Gene3D - 315 399 IPR042197 -
Tsu03g02425 500 Gene3D - 246 314 IPR027417 -
Tsu03g02425 500 SUPERFAMILY "Winged helix" DNA-binding domain 386 490 IPR036390 -
Tsu03g02425 500 Pfam NB-ARC domain 256 383 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g02425 Tsu-Chr3 28117166 28120462 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g02425 148 499 WRKY Transcription Factor Family AT4G12020 30.000 6.09e-44 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g02425 - - gmx:100809963 432.95