Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g02390 ATGCTAAAGAAGAAGTCTAGTTTGGGTCGTCAAAAAATCCCTATTGAAAAAATACCTAAAAAGAGTCATTTACAAGTTACATTTTCTAAACGTCGTTCAGGACTTTTCAAAAAGGCTAGTGAACTTTGCACACTATGTGGGGTGGAGATAGCAATTGTCGTTTTCTCTCCGGCTAATAAGGCATTCTCTTTTGGACATCCAGAAGTTGAATCCATCATTGATCGTTATTTGAGCCGAAATCCTCCACAGGAGTCCAGTTCTAACCAAATTGTTGAGGCTCATAGAAATTCTAATGTCCGCGATCTCAACATGCAACTAACTCAACTTCTTAGCCATCTCGATATTGAGAAAAAACAAGGGGAGGAGATAGATCATGTGAGGAAAGCTAGGCAAATGCAATTTTGGTGGGAAAGCCCTATTGATGAACTTGGCTTCAATGAATTGCTCCAACTAAAGGTTTCTATTGAGGACCTAAAGAAGAATCTTGGAAAAATTGCAAGCAAATGCATGATGGAACAATCAAACATGTCTTCACCAAATATTGGGGCTAATGGATTTGGACGTTATGATGCCTTTGAGAACAAACCAGGTGTAGGGATTAATAATATTACTTCAACCTTTCCTCCCTACTATCTTGGTTTTCGACATGGATATCCTTGA 660 0.3864 MLKKKSSLGRQKIPIEKIPKKSHLQVTFSKRRSGLFKKASELCTLCGVEIAIVVFSPANKAFSFGHPEVESIIDRYLSRNPPQESSSNQIVEAHRNSNVRDLNMQLTQLLSHLDIEKKQGEEIDHVRKARQMQFWWESPIDELGFNELLQLKVSIEDLKKNLGKIASKCMMEQSNMSSPNIGANGFGRYDAFENKPGVGINNITSTFPPYYLGFRHGYP 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g02390 219 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Tsu03g02390 219 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 7 177 - -
Tsu03g02390 219 SUPERFAMILY SRF-like 9 84 IPR036879 GO:0003677|GO:0046983
Tsu03g02390 219 PANTHER MADS BOX PROTEIN 7 177 - -
Tsu03g02390 219 CDD MADS_MEF2_like 9 77 IPR033896 GO:0000977|GO:0045944
Tsu03g02390 219 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Tsu03g02390 219 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Tsu03g02390 219 Gene3D - 90 180 - -
Tsu03g02390 219 Gene3D - 20 89 IPR036879 GO:0003677|GO:0046983
Tsu03g02390 219 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Tsu03g02390 219 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Tsu03g02390 219 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g02390 Tsu-Chr3 27278202 27278861 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g02390 5 183 Type I MADS-box Gene Family AT5G60440 51.648 1.02e-56 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tsu03g02390 SRF-TF 1.6e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g02390 - - lja:Lj0g3v0067779.1 323.553