Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g02389 ATGAAGGCTATCAAGAACTGGGCAAGGCAGATTCTTCGTGGCTTGTGCTTTCTGCATAGTCACAATCCTCCTGTTATTCATAGGGATCTAAAATGTGATAACATTTTTGTTAATGGGAATAATGGACAAGTTAAGATTGGGGATCTCGGATTGGCTATTGTCATGCAGCAGCCTACTGCCCGGAGTGTTATCGGTACTCCGGAATTCATGGCCCCAGAGCTTTATGAAGAAGAATACAATGAACTTGTTGACATATATTCCTTTGGCATGTGTATCTTGGAAATGATCACCTGTGAGTACCCGTATAGTGAATGCAAAAATCCGGCGCAGATATATAAGAAAGTTACCTCTGGTATAAAGCCTGCTTCTCTTGCTAAAGTGAATGATCCTGAAGTGAAGCAATTTATAGAGAAGTGTTTAGTTCCAGCATCTATGAGATTGCCTGCATCTGAACTGCTGAAAGACCCATTCCTCGCTACTGGAAATGTGAAGGAGATCTATCATGATCCCCTGCTGCTGCCTAATTCCCCCACTAAATCAATGAGTCCACCAACTTGTGAGCCCCATCCCATGGAGATAGATTCAAACCTCAGGCATACATTACCTGGCTCCTCTGTGGAAAGAATTAAAGAAACTTCTCAAGTTTCAATTCTTGATCTCATGAGGAAGACAGAGAACAATGAATTTAGGTTAAGAGGGGAGAAGAATGCTGAACGTACAATTTCACTTACACTGCGAATTGCTGATGCTCATGGTGGAGCTAGGAATATCCATTTTCCATTCTATGTTGATTCCGATACAACAATTTCAATTGCTGAGGAGATGGTGGAACATCTTGAGCTCAAGGATGAGGATGTAGCTGTCATTGCTGAGCTAATACACAACATGATTTTTGAGCTTGTGCCTAACTGGAAACCCTTGTGCGAGAACTTCTCATCTGGAACAGATCATTTATACAGTCCTTCAGAAGCTCAGAATGGTGAACAGTTAAACTGTCATTGGACATTGGGATCAAATAACTTTGATATGAAGGCAATGTATGAGGATTTAGGTCACTCACAGCTTGACGGGGAAGATCAGGACAAACAAGAATCTGTTTCATCAGATATTTCAGCTGAGTATGGGATTGCGGTTGCCACTGATTCTAAAGGTGTAGAGCCTGATTGTTTTATTCTTCATGAATGTTGCAAGGGATCCCATGGCTTAAATTCCAATTCAGATGTCAGGATTTATGGTCAAGAAGGTGGAAACAATAATCAATCAGAGAACTCAGCAGTCTCATGGTCCAGTCCATCCATAAACCTTGACATGTCAAGCAAATGCCCTCTTACTCCACAGGAAAAAGATCATTTAAACGAGCTACAGTTGGAGCTTGAAGCAATTGAAATCCAGTATCAGCAAAGTTTTCGTGAGCTTGTGAAGATGAGGGAGGAAGCCATAGAAAATGTCAAAAAGAGATGGActtcaaagaagaaaatatcAGTTATATGA 1491 0.4071 MKAIKNWARQILRGLCFLHSHNPPVIHRDLKCDNIFVNGNNGQVKIGDLGLAIVMQQPTARSVIGTPEFMAPELYEEEYNELVDIYSFGMCILEMITCEYPYSECKNPAQIYKKVTSGIKPASLAKVNDPEVKQFIEKCLVPASMRLPASELLKDPFLATGNVKEIYHDPLLLPNSPTKSMSPPTCEPHPMEIDSNLRHTLPGSSVERIKETSQVSILDLMRKTENNEFRLRGEKNAERTISLTLRIADAHGGARNIHFPFYVDSDTTISIAEEMVEHLELKDEDVAVIAELIHNMIFELVPNWKPLCENFSSGTDHLYSPSEAQNGEQLNCHWTLGSNNFDMKAMYEDLGHSQLDGEDQDKQESVSSDISAEYGIAVATDSKGVEPDCFILHECCKGSHGLNSNSDVRIYGQEGGNNNQSENSAVSWSSPSINLDMSSKCPLTPQEKDHLNELQLELEAIEIQYQQSFRELVKMREEAIENVKKRWTSKKKISVI 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g02389 496 SMART serkin_6 1 158 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g02389 496 SUPERFAMILY Protein kinase-like (PK-like) 3 205 IPR011009 -
Tsu03g02389 496 Gene3D Transferase(Phosphotransferase) domain 1 1 164 - -
Tsu03g02389 496 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 241 297 IPR024678 GO:0004674|GO:0005524
Tsu03g02389 496 Coils Coil 451 478 - -
Tsu03g02389 496 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 1 491 - -
Tsu03g02389 496 Gene3D - 239 325 - -
Tsu03g02389 496 ProSiteProfiles Protein kinase domain profile. 1 158 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g02389 496 PANTHER WNK KINASE 1 491 - -
Tsu03g02389 496 ProSitePatterns Serine/Threonine protein kinases active-site signature. 25 37 IPR008271 GO:0004672|GO:0006468
Tsu03g02389 496 Pfam Protein kinase domain 2 158 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g02389 Tsu-Chr3 27272265 27275490 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g02389 2 495 MAP Kinase Kinase Kinase AT5G41990 46.988 5.97e-130 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Tsu03g02389 Pkinase 1.5e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g02389 K08867 - gmx:100783717 694.115