Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g02386 ATGAATGTAAGGAAACATGATATGATGCTAAGTAGTGTTCCAAAGGCTTCAACAATTACAAATTCTCCTACTCCTTCAAATATGTTTCCAGAGGAACTTCAACTTCAGCTTTATCAAGCATTCATATTTTCAATTCCTatacttttttcaataattctATTTCTCCTTTTTTACTTGTTTTACCTTAAGAGAAGAGCTTCCTCTTTCTCTCCACACTTACTTCCAAGGATTAATCCTCCAACTACATATCGTTATTATTCTTCTTCCTCACCTCGCCGTTTGGATTTGACCGTGCAATTCTTGGACAAACTTCCTAGAATTTTGTTTGATGAGGGTTTACAAGCAAGGGATTCAGTATGTTGTGTATGTTTGGGAGAATTTGAGGTGAAAGAAGAGTTGCTACAGATTCCATATTGCAAGCATGTGTTCCACATAGATTGCATACATCATTGGCTACAATCAAATTCCACTTGTCCACTTTGTAGATGTTCCATCATTCCCACTACCACAAAGTTCCTTAATCAAGCACCacctattaatattattatatcagACCCACCACACCAAAGTCCTATTAATTCAGATTCTCCATTACAAATTTCATCATTGCCAGATGAAGATGGTGATTCCTCATATATCATGACAAGGGAATGA 654 0.3486 MNVRKHDMMLSSVPKASTITNSPTPSNMFPEELQLQLYQAFIFSIPILFSIILFLLFYLFYLKRRASSFSPHLLPRINPPTTYRYYSSSSPRRLDLTVQFLDKLPRILFDEGLQARDSVCCVCLGEFEVKEELLQIPYCKHVFHIDCIHHWLQSNSTCPLCRCSIIPTTTKFLNQAPPINIIISDPPHQSPINSDSPLQISSLPDEDGDSSYIMTRE 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g02386 217 MobiDBLite consensus disorder prediction 193 208 - -
Tsu03g02386 217 SUPERFAMILY RING/U-box 98 168 - -
Tsu03g02386 217 ProSiteProfiles Zinc finger RING-type profile. 120 162 IPR001841 -
Tsu03g02386 217 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 167 IPR013083 -
Tsu03g02386 217 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 25 177 - -
Tsu03g02386 217 MobiDBLite consensus disorder prediction 193 217 - -
Tsu03g02386 217 Pfam Ring finger domain 120 162 IPR001841 -
Tsu03g02386 217 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHA4A-RELATED 25 177 - -
Tsu03g02386 217 SMART ring_2 120 161 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g02386 Tsu-Chr3 27240700 27242919 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g02386 9 167 C3H Transcription Factor Family AT4G10150 38.365 7.37e-34 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g02386 K19039 - aprc:113858113 251.906