Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g02360 ATGCTTGTTAATAACACCACGTTAACAACAAGTGGATCGTGTAAACAACAACATCTCGCACGTAGAGTCACTTCACGTGAAACACATCCATGCTCTTCCCATTCCGTCAATTTAGAATCTAATTCCAACGGGCATCAGAATCCTCAATGTATCTCAGTGTTAACGCGTATTTCTCCGATCAATACCACATCAAGAAAGCAGCAAGAGAGTTCACTTTATTCGGCCGGCGACATTCTTTGTTGTAGTTCGATCAATTCTTCAGACATCCGTAATTGCAACAAattatgtttgaaaaattatGAACAGGAAGTAGCTTCAAAAGTTTGGCGCGGAACTCTAAATTTGGGAGTTGAAGTGTCAGAGGGAGTGGAGGAGGTGAAAGGGTATGTGAAGAATTACTTTGAGAAAAAATTTACAGAAAATTGGGAGAACCGGCTAAACCTCAACGGGGTCCAGTTCCAATGTTTGTCGGAAGAGGACAATTCTAGGTTGATGGCACCTTTTTCTACCAATGAAGTTAGGGAGGTGACTTGGAGTAGCGATGGTAACAAATGCCTAGGCCCGGATggtttcaatttcaactttttGAAGGCTTGTTGGGAAATCCTAAAAGGTGATATTATGGATTTTCTACACGAATTTTATAGCAGTGCCCCTCTACCAAAGGCAATAACGACATCTTTTTTGGCTCTCGTTCCTAAGAAAGACCATCCACAAGCTCTCTCAGACTATCGACCTATTTTCTTGGTGTCTAGTATGTACAAGATTTTGTCTAAGGTTTTAGCAGGGTGGAGGCGATGGATTCGTGTTTGTGTATTTCAAAGTTCTATGTCAGTTTTGGTTAATGGAAGTCCCACGGAGGATTTTTGTATTTCAAGGCGACCCTTTATCATCTTCCTTTTCTTGATAGTTGCGGAATGCCTTACGGGACTTATGACAAGAGCAGTGGACAATGGTCTTTTCCATAGTTATAAGAGCAAGCTCTATGGTATAAATCTTGACGATAGTTTTTTGAGTGCTTCATCAGCTTTCTTGAATTGTGGTGTGGAGTCTATTCCCTTTCGTTTTCTTGGAATAACGGCTCCGGCTTGTGTGATAAAGGATTTGGtgaaaattcaaagaaatttcTTGTGGAGAGGATGCATGGATAATAAGAAGTGGTTTGGttGTTGCTTATTATTGCAAGCTTCTCCTCTGCATCTTGATATCAAGTATCACCTGAATCTGTCTCTGATGGACAAGGAAGGTGCTGAACTTCAAACTATTGCAGTTTCAATGATGTCagattcttctcttcttcatcatcagTCGAGAAGACCTAGTCTCTCATCCCTACAAATACCAACAAGGACACTAGAAAGTGCATTATCTTCTTCTACTAAGACAGATGGTCCTACATTGTCAAGTCCAGGTTCCACTAGAGGACTGCCACCAAGGCCACATTCTACTACCAAAGTGAAGTCCTCTATGAGAAATTTACTTTCTGATAGGAGCTTTAGGACAAAAACTTATTCACAAGATACTGAAAAGACAGTTTTGATTGTTCCTGATACTTTATCATCAGATAATGGTTCTCTGGATAATAAGCCTTCAACTTCAAGGTCCCTTTCACTTAATAAGATTTTGTTCCCTTCATCAACCAAAGCTGCACATTCGTTACCGGTTACTCCAATTGCAAATTCAGGTGCAGAGAATGTACATGGAAGAAATGTAGGGGGTGATTCCGATTTAAATAAAATGAAAGTGAACAAGCATATGACTCGATCATTTTCGGTTCCGGTTAATGTCAAGGCTACTAATAATTTAAGGCCTACAGATTCTAGGCGTCTTGTTCGTGTAATTTCAGTAAGACCACATCCAGCAACTACTGATGACAATTCAACTCGCAGTGATTCAATGCAAGAGATTGTCATTGAAGATGCTTCTGAGGATATTCCAGAAGAAGAAGCAGTTTGTAGAATTTGTTTGGTGGAGCTTGCGGAAGGTGGAGATACTCTTAGGATGGACTGCAGTTGTAAAGGTGAGCTTGCACTTGCTCACCAAGACTGTGCAGTAAAGTGGTTTAGTATCAAAGGAAATAAGACATGTGATGTCTGCAAACAAGATGTCCGGAACCTTCCAGTAACACTCTTGAAAATTTCTAGCCCTCCAACTGTTGTTCGGCAGACATTGACTGCATCACAGCAGAGAGCGGTAGCTAATTACAGGATATGGCAGGATGTACCAGTCCTTGTGTTGGTCAGCATGCTTGCATACTTTTGCTTTCTGGAGGAACTACTGGTTTCGGATTTGGGCTCACGTGCTCTCGCAATTTCATTGCCTTTCTCTTGCATTTTAGGCCTCCTTTCTTCTATGATTGCTTCAACCATGGTGAGCAGGAGTTACATATGGGCTTATGCTTGCTTCCAGTTTGCATTTGTCATCCTGTTTGCTCATATATTCTATTCTATACTTAATGTTAGTGCGCTTTTCTCGGTTCTTCTTTCAACATTCACTGGATTTGGAATTTCAATCAGCATGAATTCTCTACTAATGGAATATATTAGATGGAAAACAAATAGGCAGATTCAATCTGCTAATCGAAATATTATTTCGAGACAACTGCAGCAGCAAGAAACTCAAAGACAACAACATCAACTGCAAAGGATGCAGCAAGAGCAGCACCAATGA 2670 0.397 MLVNNTTLTTSGSCKQQHLARRVTSRETHPCSSHSVNLESNSNGHQNPQCISVLTRISPINTTSRKQQESSLYSAGDILCCSSINSSDIRNCNKLCLKNYEQEVASKVWRGTLNLGVEVSEGVEEVKGYVKNYFEKKFTENWENRLNLNGVQFQCLSEEDNSRLMAPFSTNEVREVTWSSDGNKCLGPDGFNFNFLKACWEILKGDIMDFLHEFYSSAPLPKAITTSFLALVPKKDHPQALSDYRPIFLVSSMYKILSKVLAGWRRWIRVCVFQSSMSVLVNGSPTEDFCISRRPFIIFLFLIVAECLTGLMTRAVDNGLFHSYKSKLYGINLDDSFLSASSAFLNCGVESIPFRFLGITAPACVIKDLVKIQRNFLWRGCMDNKKWFGCCLLLQASPLHLDIKYHLNLSLMDKEGAELQTIAVSMMSDSSLLHHQSRRPSLSSLQIPTRTLESALSSSTKTDGPTLSSPGSTRGLPPRPHSTTKVKSSMRNLLSDRSFRTKTYSQDTEKTVLIVPDTLSSDNGSLDNKPSTSRSLSLNKILFPSSTKAAHSLPVTPIANSGAENVHGRNVGGDSDLNKMKVNKHMTRSFSVPVNVKATNNLRPTDSRRLVRVISVRPHPATTDDNSTRSDSMQEIVIEDASEDIPEEEAVCRICLVELAEGGDTLRMDCSCKGELALAHQDCAVKWFSIKGNKTCDVCKQDVRNLPVTLLKISSPPTVVRQTLTASQQRAVANYRIWQDVPVLVLVSMLAYFCFLEELLVSDLGSRALAISLPFSCILGLLSSMIASTMVSRSYIWAYACFQFAFVILFAHIFYSILNVSALFSVLLSTFTGFGISISMNSLLMEYIRWKTNRQIQSANRNIISRQLQQQETQRQQHQLQRMQQEQHQ 889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g02360 889 Coils Coil 861 888 - -
Tsu03g02360 889 CDD RING_CH-C4HC3_MARCH 652 700 - -
Tsu03g02360 889 MobiDBLite consensus disorder prediction 25 45 - -
Tsu03g02360 889 SMART ringv_2 651 700 IPR011016 GO:0008270
Tsu03g02360 889 MobiDBLite consensus disorder prediction 29 45 - -
Tsu03g02360 889 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 638 707 IPR013083 -
Tsu03g02360 889 PANTHER OS02G0165000 PROTEIN 427 876 - -
Tsu03g02360 889 ProSiteProfiles Zinc finger RING-CH-type profile. 644 706 IPR011016 GO:0008270
Tsu03g02360 889 SUPERFAMILY RING/U-box 648 703 - -
Tsu03g02360 889 Pfam RING-variant domain 652 699 IPR011016 GO:0008270
Tsu03g02360 889 PANTHER OS02G0165000 PROTEIN 427 876 - -
Tsu03g02360 889 MobiDBLite consensus disorder prediction 453 502 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g02360 Tsu-Chr3 26721432 26731141 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g02360 638 706 C3H Transcription Factor Family AT2G37950 44.286 4.08e-14 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g02360 - - gmx:100779396 642.884