Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g02333 ATGTCTATCACTTCCACTGCTACTCCCCTCTTCAAACCCCTCACCATGGCCGCCGAATCATCATCCCTTCTCTTCTCTTCACCCTCCTCCCTCTTCTACCCTAAAACCAAACCCACCTTCTTCAAACTTCATTTCTCCCTCAATTCTTCCCCTTCTCTCTCCCTCAAAACTAATCGCTCTCTCGCTTCTCCCTTATTCGTCGCTCAAGAAGGCAGCGACACCCTAACTACTTCACCAGACGAAGCCGAACTTCTCGATTGGGAACCGACTGCCGAAACTGAAGAGACCGGTGACGATGAAGATTCTTCTGAAGGAGATTTCGCTGAACCACCCGAAGATGCTAAATTATTTGTTGGAAATTTGCCTTTTTCTGTTGATAGTGAAAAATTAGCCATGCTTTTCGGAGAGGCCGGTACCGTCGAGATTGCTGAGgttattTATAACAGGGATACTGACCAGAGTCGTGGATTTGGATTTGTAACCATGAGTACTGTTGAAGAAGCCGAATCTGCTGTCCAGAAGTTTAACCGCTATGATTATAATGGAAGGTCGTTGAATGTTAACATAGCTTCTCCAAGAGGATCTCGGCCTGAGCGTATTGAGCGTCAACCTCGTTCTTTTGAACCTGTCATAAGAGCTTATGTTGGTAACTTGGCATGGGAAGTTGATGATGCTAGGCTTGAAGAGATTTTTAGTGTACATGGTAAGGTTGTCAGTGCTCGAGTGATCTATGATAGGGAGACTGGTCGATCACGTGGCTTTGGCTTTGTCACAATGTCTGATGATACGGAAATGAATGATGCCATTGCTGCTCTTGATGGTCAGAGTTTGGATGGTAGGGCAATAAGAGTGAGTATTGCTGAAGACAGGCCCAGGCGTAACTCGTTTTGA 891 0.4568 MSITSTATPLFKPLTMAAESSSLLFSSPSSLFYPKTKPTFFKLHFSLNSSPSLSLKTNRSLASPLFVAQEGSDTLTTSPDEAELLDWEPTAETEETGDDEDSSEGDFAEPPEDAKLFVGNLPFSVDSEKLAMLFGEAGTVEIAEVIYNRDTDQSRGFGFVTMSTVEEAESAVQKFNRYDYNGRSLNVNIASPRGSRPERIERQPRSFEPVIRAYVGNLAWEVDDARLEEIFSVHGKVVSARVIYDRETGRSRGFGFVTMSDDTEMNDAIAALDGQSLDGRAIRVSIAEDRPRRNSF 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g02333 296 CDD RRM_HP0827_like 115 192 - -
Tsu03g02333 296 Gene3D - 69 200 IPR012677 -
Tsu03g02333 296 PANTHER RIBONUCLEOPROTEIN 98 296 - -
Tsu03g02333 296 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 211 289 IPR000504 GO:0003723
Tsu03g02333 296 PANTHER OS02G0815200 PROTEIN 98 296 - -
Tsu03g02333 296 SUPERFAMILY RNA-binding domain, RBD 206 294 IPR035979 GO:0003676
Tsu03g02333 296 MobiDBLite consensus disorder prediction 69 111 - -
Tsu03g02333 296 Gene3D - 201 296 IPR012677 -
Tsu03g02333 296 SUPERFAMILY RNA-binding domain, RBD 110 205 IPR035979 GO:0003676
Tsu03g02333 296 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 116 185 IPR000504 GO:0003723
Tsu03g02333 296 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 214 283 IPR000504 GO:0003723
Tsu03g02333 296 MobiDBLite consensus disorder prediction 85 107 - -
Tsu03g02333 296 CDD RRM_HP0827_like 212 288 - -
Tsu03g02333 296 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 114 192 IPR000504 GO:0003723
Tsu03g02333 296 SMART rrm1_1 115 188 IPR000504 GO:0003723
Tsu03g02333 296 SMART rrm1_1 212 285 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g02333 Tsu-Chr3 26364181 26366551 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g02333 116 293 Eukaryotic Initiation Factors Gene Family AT3G16380 36.170 7.63e-23 96.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g02333 - - gmx:100810381 339.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g02554 04 28774884 28776652 Tsu03g02333 03 26364181 26366551 ECH
Tsu03g02333 03 26364181 26366551 Tsu03g02333 03 26364181 26366551 ECH
Tsu04g02554 04 28774884 28776652 Tsu03g02333 03 26364181 26366551 PCT