Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g02317 ATGATTTGTTTTTCCTTTATAGTAATTTGGAAATGTAGATATCGAGCTTTTGATGAGTTGGAAGGAATTGAAGTGGCTTGGAATCAGGTTAAGGTGTCTGATCTGTTGCGTAATTCTGAAGATTTGGAGCGACTTTATTCGGAAGTTCATTTGCTCAAGACTTTGAAGCATAAGaatattattaagttttatAGTTCATGGGTTGACACGAAGAATGAGAATATTAACTTTATAACTGAAATTTTCACATCTGGAACATTGCGCCAATATCGGAAGAAACATAAGCACGTTGATTTGAGAGCTTTGAAGAAATGGTCTAGGCAGATTTTGGAGGGTCTTTCATATCTTCATAGTCATAATCCACCAGTTATTCATCGAGACCTTAAGTGTGACAATATTTTTGTCAATGGGAATCAAGGGGAGGTGAAAATTGGCGATTTAGGATTGGCAGCCATTCTTCAACAGGCCAATTCAGCTCACAGTGTTATAGGTACTCCGGAGTTTATGGCCCCGGAACTTTATGAAGAGGAGTACAATGAGCTTGTTGACATTTATGCTTTTGGCATGTGCTTGCTAGAATTGGTAACTGTTGAGTACCCATATGTTGAATGTGCCAATGCTGCTCAAATATACAAGAAAGTGACATCTGGAATAAAGCCAGCCTCATTAGCAAAAGTAAATGATCCTGATGTTAAAGCATTTATAGAAAAGTGTACTGCTCATGTATCGGAACGGTTGCCTGCAAAGGCTCTCTTGATGGATCCCTTCCTTCAGTCAAATTGGGATGGTGAAAGCGTTGGTCTATCTTCATTATCTGGAAACCAGGATTCAGGTGCCAAGGATAATTTTGTTGAGACAAGTAGGGAATTCACAGTGGAAGGCCAAAGGAGAGAtgttaatacaatatttttaaaattgagaattGCAGATTCCTCAGGGCATATTCGAAATATCCACTTCCCTTTCGATATTGGAGCTGATACTTCATTCTCTGTTGCTAGTGAAATGGTTGAGGAATTGGAGCTTACTGATCAAGATGTTTCGACTATTGCTATGACTATTGACTCAGAAATTCGATACCACATTCCCAGTTGGAGTCCTAGTGAAACTCCCGACAATAATTATTATCAAACTTCATGTCAAACCCCTGAAACTATGGTTGTGGCATCTCCTATGGGAAATGAATCTCCAGCTAGCCTTGCTTTGGAAATATTACCTTCAGGTCGTAAGTATTGGTCAGACTCACCCAGGGCTTTTGGTGCAAGCTCTCCATCTCTGTTGCACGGTGCTTCAAACTTGTCTTATGAAGTGGAATGTGATGGGACCGCTGATTCCCCTTTCAATAAATGTATTACGTCGGAATATTTTGAAGCAACCGGTGGAAAGTCCTCTCAAGAAAAAATGCCTGttaatttaaaagattttgaaacAGAAGACCTTAATAAAATAGCAACAAAGTTGGAGACTATGTTAACTATGCAACGAGAGGAGTTAGATGAATTGAAGAGGAAGCACAAATTAGCTGTCTCggattttttgaatgaattttctCCAGAATTTTCTCTACAGGTTCTAAACATATGTAACATGCAGATGCCTGACGATGAAATGTAG 1614 0.3792 MICFSFIVIWKCRYRAFDELEGIEVAWNQVKVSDLLRNSEDLERLYSEVHLLKTLKHKNIIKFYSSWVDTKNENINFITEIFTSGTLRQYRKKHKHVDLRALKKWSRQILEGLSYLHSHNPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAAILQQANSAHSVIGTPEFMAPELYEEEYNELVDIYAFGMCLLELVTVEYPYVECANAAQIYKKVTSGIKPASLAKVNDPDVKAFIEKCTAHVSERLPAKALLMDPFLQSNWDGESVGLSSLSGNQDSGAKDNFVETSREFTVEGQRRDVNTIFLKLRIADSSGHIRNIHFPFDIGADTSFSVASEMVEELELTDQDVSTIAMTIDSEIRYHIPSWSPSETPDNNYYQTSCQTPETMVVASPMGNESPASLALEILPSGRKYWSDSPRAFGASSPSLLHGASNLSYEVECDGTADSPFNKCITSEYFEATGGKSSQEKMPVNLKDFETEDLNKIATKLETMLTMQREELDELKRKHKLAVSDFLNEFSPEFSLQVLNICNMQMPDDEM 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g02317 537 SUPERFAMILY Protein kinase-like (PK-like) 14 387 IPR011009 -
Tsu03g02317 537 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 304 358 IPR024678 GO:0004674|GO:0005524
Tsu03g02317 537 Pfam Protein kinase domain 14 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g02317 537 Gene3D Phosphorylase Kinase; domain 1 9 80 - -
Tsu03g02317 537 CDD STKc_WNK 14 257 - -
Tsu03g02317 537 ProSiteProfiles Protein kinase domain profile. 1 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g02317 537 Gene3D Transferase(Phosphotransferase) domain 1 82 263 - -
Tsu03g02317 537 Gene3D - 300 386 - -
Tsu03g02317 537 Coils Coil 484 504 - -
Tsu03g02317 537 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 10 534 - -
Tsu03g02317 537 PANTHER SERINE/THREONINE-PROTEIN KINASE-RELATED 10 534 - -
Tsu03g02317 537 ProSitePatterns Serine/Threonine protein kinases active-site signature. 123 135 IPR008271 GO:0004672|GO:0006468
Tsu03g02317 537 SMART serkin_6 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g02317 Tsu-Chr3 26208991 26213364 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g02317 75 525 MAP Kinase Kinase Kinase AT3G48260 58.370 7.50e-172 490
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Tsu03g02317 Pkinase 4.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g02317 K08867 - gmx:100301899 723.005
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g02317 03 26208991 26213364 Tsu03g02317 03 26208991 26213364 ECH