Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tsu03g02316 | ATGgcaatttcaatttcttcatctaCTTCCTCCAAACTTAAACTCACCCCCTCTCACCCACCACACCCCCACACCTTCATCGCTTCCGCTTCCATTTCCAAAAACACAACAACCACACGCTCAACCACAACAAACCCCAAACTAACCCTAACTCGTCTCACTTCTTCGTTCCTTAACCCTTCCACAATCCTCCACCTTACTCCCACTTCCCAACCCAATCACCACCGTTCATCTTCTTCCCCTTTCACCGTCCGTGCTGCACGTGGCAAATTCGAACGCAAAAAACCTCATCTCAATATCGGTACAATTGGTCACGTCGACCATGGTAAAACCACTTTAACCGCTGCTCTTACTATGGCTCTTGCTTCTTTAGGTAACAGTGCTCCTAAAAAATACGATGAAATTGATGCTGCTCCTGAAGAGCGTGCTCGTGGAATTACTATTAATACTGCTACTGTTGAATATGAAACGGAAACTCGTCATTATGCTCATGTTGATTGCCCTGGTCACGCTGATTATGTTAAGAATATGATCACCGGTGCTGCTCAAATGGATGGCGCTATCCTCGTTGTCTCCGGCGCTGATGGTCCTATGCCTCAAACCAAAGAACATATCCTTCTCGCCAAACAGGTTGGTGTTCCGAGTGTGGTTGTGTTTTTGAACAAGCAGGACCAAGTGGATGATGAGGAGCTTCTTGAACTTGTGGACCTTGAAGTTCGTGAGCTTCTGTCATCTTATGAGTTTCCTGGCGATGACATTCCGATTGTTTCTGGTTCCGCGCTCTTGGCTTTAGAAGCATTGATGGCAAACCCTACACTTAAACGTGGTGATGACAAGTGGGTGGATAAGATTTACCAGCTCATGGATGAAGTTGACAAATACATACCAATCCCTCAACGTCAAACGGATCTTCCCTTTTTGCTTGCTGTTGAGGATGTGTTTTCAATCACCGGTCGTGGAACAGTTGCCACTGGGAGAATTGAAAGAGGGACTGTTAAAGTTGGTGATGTAGTTGACCTTGTTGGTTTAAGGAACACAAGGAGCACAACAGTGACGGGAGTGGAAATGTTCCAGAAGATTTTGGATGATGCTATGGCCGGCGACAATGTGGGGTTGTTGCTGAGAGGTCTTCAGAAGGATGATATTGAGAGAGGAATGGTTTTGGCTAAGCCTGGAACTATTACTCCTCACTCTAAGTTTAGTGCTATTGTGTATGTTTTGAAGAAGGAAGAAGGTGGAAGACACTCACCTTTCTTTGCTGGTTATAGGCCTCAGTTTTATATGAGGACTACCGATGTTACCGGAAAAGTTACTTCTATTATGAATGATAAGGATGAGGAGTCGAAGATGGTCATGCCCGGTGATCGTGTTAAGATGGTGGTTGAACTCATTGTCCCTGTGGCTATTGAACAAGGAATGAGGTTTGCTATTAGAGAAGGAGGGAAGACCGTTGGAGCCGGTGTTATCGGAGCTATCATTGAGTGA | 1485 | 0.4492 | MAISISSSTSSKLKLTPSHPPHPHTFIASASISKNTTTTRSTTTNPKLTLTRLTSSFLNPSTILHLTPTSQPNHHRSSSSPFTVRAARGKFERKKPHLNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETETRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPSVVVFLNKQDQVDDEELLELVDLEVRELLSSYEFPGDDIPIVSGSALLALEALMANPTLKRGDDKWVDKIYQLMDEVDKYIPIPQRQTDLPFLLAVEDVFSITGRGTVATGRIERGTVKVGDVVDLVGLRNTRSTTVTGVEMFQKILDDAMAGDNVGLLLRGLQKDDIERGMVLAKPGTITPHSKFSAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGKVTSIMNDKDEESKMVMPGDRVKMVVELIVPVAIEQGMRFAIREGGKTVGAGVIGAIIE | 494 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tsu03g02316 | 494 | MobiDBLite | consensus disorder prediction | 28 | 44 | - | - | |
Tsu03g02316 | 494 | MobiDBLite | consensus disorder prediction | 1 | 16 | - | - | |
Tsu03g02316 | 494 | CDD | EF_Tu | 96 | 298 | IPR041709 | - | |
Tsu03g02316 | 494 | Hamap | Elongation factor Tu [tuf]. | 86 | 494 | IPR004541 | GO:0003746|GO:0005525|GO:0006414 | |
Tsu03g02316 | 494 | SUPERFAMILY | Translation proteins | 300 | 396 | IPR009000 | - | |
Tsu03g02316 | 494 | TIGRFAM | EF-Tu: translation elongation factor Tu | 87 | 494 | IPR004541 | GO:0003746|GO:0005525|GO:0006414 | |
Tsu03g02316 | 494 | Pfam | Elongation factor Tu C-terminal domain | 393 | 492 | IPR004160 | - | |
Tsu03g02316 | 494 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 93 | 321 | IPR027417 | - | |
Tsu03g02316 | 494 | Gene3D | Translation factors | 433 | 493 | - | - | |
Tsu03g02316 | 494 | PRINTS | GTP-binding elongation factor signature | 99 | 112 | IPR000795 | GO:0003924|GO:0005525 | |
Tsu03g02316 | 494 | PRINTS | GTP-binding elongation factor signature | 143 | 151 | IPR000795 | GO:0003924|GO:0005525 | |
Tsu03g02316 | 494 | PRINTS | GTP-binding elongation factor signature | 163 | 173 | IPR000795 | GO:0003924|GO:0005525 | |
Tsu03g02316 | 494 | PRINTS | GTP-binding elongation factor signature | 179 | 190 | IPR000795 | GO:0003924|GO:0005525 | |
Tsu03g02316 | 494 | PRINTS | GTP-binding elongation factor signature | 216 | 225 | IPR000795 | GO:0003924|GO:0005525 | |
Tsu03g02316 | 494 | ProSiteProfiles | Translational (tr)-type guanine nucleotide-binding (G) domain profile. | 95 | 299 | IPR000795 | GO:0003924|GO:0005525 | |
Tsu03g02316 | 494 | PANTHER | ELONGATION FACTOR TU | 31 | 494 | - | - | |
Tsu03g02316 | 494 | CDD | EFTU_II | 306 | 392 | IPR033720 | - | |
Tsu03g02316 | 494 | Pfam | Elongation factor Tu GTP binding domain | 95 | 296 | IPR000795 | GO:0003924|GO:0005525 | |
Tsu03g02316 | 494 | Gene3D | - | 87 | 298 | IPR027417 | - | |
Tsu03g02316 | 494 | SUPERFAMILY | EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain | 393 | 493 | IPR009001 | - | |
Tsu03g02316 | 494 | TIGRFAM | small_GTP: small GTP-binding protein domain | 99 | 231 | IPR005225 | GO:0005525 | |
Tsu03g02316 | 494 | MobiDBLite | consensus disorder prediction | 1 | 44 | - | - | |
Tsu03g02316 | 494 | CDD | EFTU_III | 395 | 489 | - | - | |
Tsu03g02316 | 494 | Pfam | Elongation factor Tu domain 2 | 320 | 388 | IPR004161 | GO:0005525 | |
Tsu03g02316 | 494 | ProSitePatterns | Translational (tr)-type guanine nucleotide-binding (G) domain signature. | 136 | 151 | IPR031157 | - | |
Tsu03g02316 | 494 | Gene3D | Translation factors | 301 | 429 | - | - | |
Tsu03g02316 | 494 | PANTHER | ELONGATION FACTOR TU-RELATED | 31 | 494 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Tsu03g02316 | Tsu-Chr3 | 26187755 | 26190457 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Tsu03g02316 | 93 | 492 | Eukaryotic Initiation Factors Gene Family | AT5G60390 | 28.924 | 1.49e-43 | 158 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tsu03g02316 | K02358 | - | jre:108984280 | 778.474 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Tsu03g02316 | 03 | 26187755 | 26190457 | Tsu03g02316 | 03 | 26187755 | 26190457 | ECH |