Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g02316 ATGgcaatttcaatttcttcatctaCTTCCTCCAAACTTAAACTCACCCCCTCTCACCCACCACACCCCCACACCTTCATCGCTTCCGCTTCCATTTCCAAAAACACAACAACCACACGCTCAACCACAACAAACCCCAAACTAACCCTAACTCGTCTCACTTCTTCGTTCCTTAACCCTTCCACAATCCTCCACCTTACTCCCACTTCCCAACCCAATCACCACCGTTCATCTTCTTCCCCTTTCACCGTCCGTGCTGCACGTGGCAAATTCGAACGCAAAAAACCTCATCTCAATATCGGTACAATTGGTCACGTCGACCATGGTAAAACCACTTTAACCGCTGCTCTTACTATGGCTCTTGCTTCTTTAGGTAACAGTGCTCCTAAAAAATACGATGAAATTGATGCTGCTCCTGAAGAGCGTGCTCGTGGAATTACTATTAATACTGCTACTGTTGAATATGAAACGGAAACTCGTCATTATGCTCATGTTGATTGCCCTGGTCACGCTGATTATGTTAAGAATATGATCACCGGTGCTGCTCAAATGGATGGCGCTATCCTCGTTGTCTCCGGCGCTGATGGTCCTATGCCTCAAACCAAAGAACATATCCTTCTCGCCAAACAGGTTGGTGTTCCGAGTGTGGTTGTGTTTTTGAACAAGCAGGACCAAGTGGATGATGAGGAGCTTCTTGAACTTGTGGACCTTGAAGTTCGTGAGCTTCTGTCATCTTATGAGTTTCCTGGCGATGACATTCCGATTGTTTCTGGTTCCGCGCTCTTGGCTTTAGAAGCATTGATGGCAAACCCTACACTTAAACGTGGTGATGACAAGTGGGTGGATAAGATTTACCAGCTCATGGATGAAGTTGACAAATACATACCAATCCCTCAACGTCAAACGGATCTTCCCTTTTTGCTTGCTGTTGAGGATGTGTTTTCAATCACCGGTCGTGGAACAGTTGCCACTGGGAGAATTGAAAGAGGGACTGTTAAAGTTGGTGATGTAGTTGACCTTGTTGGTTTAAGGAACACAAGGAGCACAACAGTGACGGGAGTGGAAATGTTCCAGAAGATTTTGGATGATGCTATGGCCGGCGACAATGTGGGGTTGTTGCTGAGAGGTCTTCAGAAGGATGATATTGAGAGAGGAATGGTTTTGGCTAAGCCTGGAACTATTACTCCTCACTCTAAGTTTAGTGCTATTGTGTATGTTTTGAAGAAGGAAGAAGGTGGAAGACACTCACCTTTCTTTGCTGGTTATAGGCCTCAGTTTTATATGAGGACTACCGATGTTACCGGAAAAGTTACTTCTATTATGAATGATAAGGATGAGGAGTCGAAGATGGTCATGCCCGGTGATCGTGTTAAGATGGTGGTTGAACTCATTGTCCCTGTGGCTATTGAACAAGGAATGAGGTTTGCTATTAGAGAAGGAGGGAAGACCGTTGGAGCCGGTGTTATCGGAGCTATCATTGAGTGA 1485 0.4492 MAISISSSTSSKLKLTPSHPPHPHTFIASASISKNTTTTRSTTTNPKLTLTRLTSSFLNPSTILHLTPTSQPNHHRSSSSPFTVRAARGKFERKKPHLNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETETRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPSVVVFLNKQDQVDDEELLELVDLEVRELLSSYEFPGDDIPIVSGSALLALEALMANPTLKRGDDKWVDKIYQLMDEVDKYIPIPQRQTDLPFLLAVEDVFSITGRGTVATGRIERGTVKVGDVVDLVGLRNTRSTTVTGVEMFQKILDDAMAGDNVGLLLRGLQKDDIERGMVLAKPGTITPHSKFSAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGKVTSIMNDKDEESKMVMPGDRVKMVVELIVPVAIEQGMRFAIREGGKTVGAGVIGAIIE 494
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g02316 494 MobiDBLite consensus disorder prediction 28 44 - -
Tsu03g02316 494 MobiDBLite consensus disorder prediction 1 16 - -
Tsu03g02316 494 CDD EF_Tu 96 298 IPR041709 -
Tsu03g02316 494 Hamap Elongation factor Tu [tuf]. 86 494 IPR004541 GO:0003746|GO:0005525|GO:0006414
Tsu03g02316 494 SUPERFAMILY Translation proteins 300 396 IPR009000 -
Tsu03g02316 494 TIGRFAM EF-Tu: translation elongation factor Tu 87 494 IPR004541 GO:0003746|GO:0005525|GO:0006414
Tsu03g02316 494 Pfam Elongation factor Tu C-terminal domain 393 492 IPR004160 -
Tsu03g02316 494 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 93 321 IPR027417 -
Tsu03g02316 494 Gene3D Translation factors 433 493 - -
Tsu03g02316 494 PRINTS GTP-binding elongation factor signature 99 112 IPR000795 GO:0003924|GO:0005525
Tsu03g02316 494 PRINTS GTP-binding elongation factor signature 143 151 IPR000795 GO:0003924|GO:0005525
Tsu03g02316 494 PRINTS GTP-binding elongation factor signature 163 173 IPR000795 GO:0003924|GO:0005525
Tsu03g02316 494 PRINTS GTP-binding elongation factor signature 179 190 IPR000795 GO:0003924|GO:0005525
Tsu03g02316 494 PRINTS GTP-binding elongation factor signature 216 225 IPR000795 GO:0003924|GO:0005525
Tsu03g02316 494 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 95 299 IPR000795 GO:0003924|GO:0005525
Tsu03g02316 494 PANTHER ELONGATION FACTOR TU 31 494 - -
Tsu03g02316 494 CDD EFTU_II 306 392 IPR033720 -
Tsu03g02316 494 Pfam Elongation factor Tu GTP binding domain 95 296 IPR000795 GO:0003924|GO:0005525
Tsu03g02316 494 Gene3D - 87 298 IPR027417 -
Tsu03g02316 494 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 393 493 IPR009001 -
Tsu03g02316 494 TIGRFAM small_GTP: small GTP-binding protein domain 99 231 IPR005225 GO:0005525
Tsu03g02316 494 MobiDBLite consensus disorder prediction 1 44 - -
Tsu03g02316 494 CDD EFTU_III 395 489 - -
Tsu03g02316 494 Pfam Elongation factor Tu domain 2 320 388 IPR004161 GO:0005525
Tsu03g02316 494 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 136 151 IPR031157 -
Tsu03g02316 494 Gene3D Translation factors 301 429 - -
Tsu03g02316 494 PANTHER ELONGATION FACTOR TU-RELATED 31 494 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Tsu03g02316 Tsu-Chr3 26187755 26190457 Dispersed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g02316 93 492 Eukaryotic Initiation Factors Gene Family AT5G60390 28.924 1.49e-43 158
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g02316 K02358 - jre:108984280 778.474
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g02316 03 26187755 26190457 Tsu03g02316 03 26187755 26190457 ECH