Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g02307 ATGGAATCTAAACCTTTGAACGCTATAAAGATCCTCTATAGCTACGGTGGCAAGATCCGTCCTCGTTCCACTGACGGTGAACTCCGTTACGTTGGTGGTCACACCAGAGTTCTCTCCGTTGATCGTTCAATTTCATTCTCAGAATTGATTGCGAAACTCGAAGAATTATGTGGTTCATCTGTGAAGTTAAGGTGTCAATTACCAAACGGAGACTTAGAAACGTTGATCTCTATCACCAACGATGAAGATTTAGCCAATATAATCGATGAATACGAACGTGTTTCGTTGAAATTAACTCATCCGTTGAAGATCAGAGCCATTCTTTTACAACCGAAATCGCTCGTGAAAGTTTCATCTGATCCGTCATCTGCTTCATCCAGTGCTAGTCTTTCTCCTTCCAGATCACCTCATACCTCCGCTGAATCGCTGCCTTACGCGGCGGCGTATCGCCTCGGACGACACAGTCGCTCGCCACGTGCGCCGTTTGGTTATTCGTTCGGCGTTAAGAATGGATCGGCGAAAGCTTGTTGCAATATGGGCCTGTTCGGTGGAAGCCCAAGGTCCTTGTATTATGGGCCTCGTTGCAATAATTACTGCCATTAA 603 0.4594 MESKPLNAIKILYSYGGKIRPRSTDGELRYVGGHTRVLSVDRSISFSELIAKLEELCGSSVKLRCQLPNGDLETLISITNDEDLANIIDEYERVSLKLTHPLKIRAILLQPKSLVKVSSDPSSASSSASLSPSRSPHTSAESLPYAAAYRLGRHSRSPRAPFGYSFGVKNGSAKACCNMGLFGGSPRSLYYGPRCNNYCH 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g02307 200 SUPERFAMILY CAD & PB1 domains 25 114 - -
Tsu03g02307 200 CDD PB1_UP2 14 108 - -
Tsu03g02307 200 Pfam PB1 domain 26 97 IPR000270 GO:0005515
Tsu03g02307 200 Gene3D - 29 110 - -
Tsu03g02307 200 PANTHER OS05G0427100 PROTEIN-RELATED 1 200 - -
Tsu03g02307 200 SMART PB1_new 23 102 IPR000270 GO:0005515
Tsu03g02307 200 PANTHER PB1 DOMAIN PROTEIN 1 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g02307 Tsu-Chr3 26096353 26097058 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g02307 1 94 MAP Kinase Kinase Kinase AT3G46920 42.553 6.23e-21 88.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g02307 - - vra:106761207 247.669
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g02307 03 26096353 26097058 Tsu03g02307 03 26096353 26097058 ECH
Tsu04g02584 04 29159749 29160871 Tsu03g02307 03 26096353 26097058 PCT