Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g02301 ATGCTTAATAATACTAAATCTCTTCCAATGATGCTAGCTAACTCAGgTATGTATGTCAAGAACACCAAGATTTCTGAAATATCAGGTGGAAGGATTGATTTCCAGATAAGGGTTCGTGTGATTAATCTCTGGACTACACCTGATCGCGCCAATGCTCATGAAGAAGGAGTTATCCACATGATTTTTCTGGATGAGGGACTTGGAAGAATTAATGCAACCATTAGGAAAGATCTGATCTCAaaatttaaagatgaaattGAGGAGGGTTCTGCTTATGTTATTGAGAAATTTATGGTTGCTAAGAATGATGCTACTTTTAAGAGCACTCCACATAAACATAAGCTTAATTTCATGCGTGGAACAAAAGTTTTTAAAGTCACAGCCCTTGAAATACCCCTGAATCATTTCGAATTCATGTCTTTTCCAGAGGTGCTTGCTTGTACCAGAGATGATCGTTTTCTTGaTCTTATTGGACATGTTGTGGAGAAAAATGCTATGAAGGAGACTGAGAAGAATGGGAAGATCAATAAAGTCATGGATGCTACTCTTGAGGATTTGGAAGGAAACAGGGTTCATTGTACCTTATGGGATAGCTTCGCAGAAAAAATGCAGCAATTTCTGGATAACCATGATCCCTCATTGCCAGTTGTGATTATACTTCAACTTTGCAAGCTTAGAAAATTTCTTGGCACAATGAGAGTTTCTAATTCTTTCTATGGCACCAAGCTTTTCTTAAATGCTCAGTTACCTGCTGTAACCAATTATATAGAAAGGTATGGTCAAATGACTGGTCCACCCATTGTTAGTGTTGGTGATGATTTGCTACAGACACCAAGGATGACAATTGAAGATCTCATTGAGGCTTCTGAGAAATGTTGTGGTTCTGTTTTAGCCTGGGCATGTGAATTTGATACCGATGTAGGGTGGTTTTACCAAGCCTGCACTCGATGTGCATCGAGAATTAGTTTTATGGGAGGTCAACTCTACTGCGACAAGTTTAAAGTCCATCTCCAAGTTATTGATAATACAGGATCAATAACCTTTATAATGTTTGATCGAGTTGTCTTTCAAGTTTTGGGAAGATCTGCACAGGACTTGCTTGATACCATGAACAATgAAGGCAATTCCTCTGCATATCCCGCTCATCTTGATGCATTTATTGACAAACACATGCTTTTTAAAATTGAAGTCACTGATGCCAACTTATACCGCAATTGGCGTTGTTATAATGTTAAAAAAGTCACCGATGACGATGATATCATCAACCGCTTTGCATCTCTTCATGGCATCAATttaaatAATGGCAGTGATGACAACAATTATAACCTCTTGCCATGTCCATTAAGCTATGACACTGCTCTGGATGCTATTGAGGGTGCTGATTCCACTAACAATGAGGAGATTATAGTTCTCAATCCATCTCATACTCCAACAAGCAAGGGGCTCGCCAAGGAAACTCTTAAGGGAGGTGATCCAACCAATAATGACCTTGTTATTGTGTTAGACAATAACCCTGCAAGAAGGTCCCTGGATCTTGATGCTCTTGGCGACCCTGCCATCAAAGAATCCTTTGTTCCAAGCGAATATGAGGATACTTCCTTTGCAAGCGACGATGATTACCATCAATTTATGCTTCCTGCTAATACAGGAGAGTGCAGTGTTCCTTCCAATCATGTTCCCATCGGCCAGCCCTCATGTGTGTGTCCAGATTGTGGCGCAGTTATGTGGTTTGAAGAACGCATTAAACGAAGTTCTAAgcgaaatccaagGATGGAAGATGACGTTTTTGCATTCAAATCCTCTATTGTTAAGGATATCCGTGAAGCTCTTGACAATTGTAACAATCCTTATGTTCGAACTTATAATATGGTGCGTGATACATTGCATATGGGCGGTATCCCTACCATTAAACTAAGGATTTTAGACAAAAGAGGTCATGACGGTCGGAGGTACAATCTTCCAACAGCTTCAGAAGTCGCTGCTTTAATTGTCGGTGATTTTGATTCTGCAGATTTTGAGAGGGACATAATTGTTGAAGAATGGTCTGGTCTCCTACAGCGCATTTCTACTTTTGAGCCAGCTTATTGGCCATTACAATATCCATTATTGTTTCCTAGAGGAGAGGATGGGCATAGAAGGGATATTGAATTCAGGGGCAATCCTAGGAAAGCTGCAAGGAAAAGGCAATTTATAACTCAATTGGAATGGGAGACTATTCATCAATTTTTGGTTGATTCTTTTAGTACAATTGAGTCTGATCGGTTGAGATACTTGAGGAATCATCAACAAGAACTAAGAGCTGACATGTACAAAGGGCTTGCTGAAGCAGTACTCAGAGGGAAAACTGATGCAACAAGCACTGGCAAGCGAATAGTCTTGCCGGCAACTTTTGTTGGTAGTGCAAGGTATATGATACAAAACTACCAAGATGCTATGGCTATTTGTTCTTGGTCTGGGTATCCAGATTTATTTATAACCTTTACTTGCAATTACAAGTGGCCTGAGCTTATAAATCACCTGAAAACTTATCAATTGAAGCCTCGCGACTGTCCTAATTTGGTGAGCCGTATTTTTAAGATCAAGCTCGATCAACTTTTTAAGGGATATAAAAAAGGCAATATTTTTGGCAAGGTAAAGGTAGTGATCTATACTATTGAATTTCAAAAGCGTGGCCTTCCGCATGCTCATATCTTGGTTTTCTTACAGTCCATATATAGAATCAGTGATCCCAGTgaaattgacaaaataatatCTGCTGAGATACCAAATAAAGATGATGATCCAGAGTTGTTTCATATAGTGTCTACGCTTATGATACATGGTCCATGCGGTGATCAAAATAAGAAATCCCCTTGCATGCAAAAAAAAACAGGTCATGATAGAGTTACAGCTGGGTTTTATCGTGACACCAACGATAGCGATGGATCACAATTGATTGATGAAATCAAAATGTATTATGACTTTAGATACCTATCGGCTTCTGAAGCTGTTTGGAGAATATTTGTGTTTGATATTAACTACAGGGAACCATCTGTTGAAAGGTTGAATTTTCATCTTGAAGATGAACAACCTGTGGTTTATCCTGATGAAGCTTCGATTGAAGAGATTATTAGCAAGCCATATGCCAAATACACCAAATTTTTAGCATGGATGGATGCTAACAAGAAGTATCCGTACGCACGAACCCGTACCTATGGTGAGTTCCCTGCAAAATTTGTGTGGAATAAAAAGGATCGGCGGTGGTCTCCACGTAAAAAGGGTTTTTCAATTGGCAGGCTTCATTTTGTTCCTCCTGGCTCTGGCCAAAAGTTTTATCTGCGGATTTTGTTGAATTATCTTAAAGGTCTTACCTCTTTTGATGATATCAAAACAGTTGATGGTGTCAAATATGATAACTATAAGGACACATGTTTTGCATTAGGTTTGATGGATGGTGATACTGAGTTTTCACAATCAATTAAGGAGGCAAGTTATTGGGAATTGGTATTAACTCCTGATCAACTAAAGAGCTATGCTTTGGTAGAAATTGAGATGTTGTTGCGAAGCAAtaacaaaagtttgaaaaattatCCTGATATGCCACGTCCAGATGAAGGAGCGATGGTTGATGAAGGGAACAGGTTGATACTTGATGAATTGAATTATGATAGAGAAATGCTTACCCAAGAGCATCATATGTTGATGTCCACAATGACTCTTGAGCAACGAGGCGTTTATGATAAGATCATGGAAAGAATCAGGGTAAGAAAACCAGCCGTTGCATCAAGCGGCATAGCTTCTTTACTCATACCCGGTGGGAGAACTACGCATTCAAGATTCAACATTCCATTCAATGTTAATGAATGCTCCACGTGTGAGATAGGTACAATAGATGATTTGGCTCACTTAATACGTCGTGCGAAGCTAATTATTTGGGATGAAGCACCTATAATACGTCGTACCTTGAAGGATATAATGCAAGTGAGAGATTTTCCATTTGGTGGTAAGGTAGTAGTGTTGGGCGGAGATTTTCGGCAAATTCTTCCAGTTATCCCAAAAGGAACAAGGTACGATATTGTCCATGCTACTATAAATTCATCTCCTCTTTGGCGTTTTTGTGAAGTCCTCACCTTAACTACTAACATGAGGCTTTTAGCTGGACACACGTCTACAGACCTTGAACATAGAAGGAAATTTTCCAAGTGGATTTTGGGAATTGGTGATGGAAGTATCGGAGAGATGGAAGATGAATGCATCAAAGTGCATATACCTGGAGATTTGTTAATTCCTAAGTCAGACAATCCACTTGCAACAATTGTTGAGAACACTTACCCAGGATTATTGCAAAACGGATGA 4335 0.3885 MLNNTKSLPMMLANSGMYVKNTKISEISGGRIDFQIRVRVINLWTTPDRANAHEEGVIHMIFLDEGLGRINATIRKDLISKFKDEIEEGSAYVIEKFMVAKNDATFKSTPHKHKLNFMRGTKVFKVTALEIPLNHFEFMSFPEVLACTRDDRFLDLIGHVVEKNAMKETEKNGKINKVMDATLEDLEGNRVHCTLWDSFAEKMQQFLDNHDPSLPVVIILQLCKLRKFLGTMRVSNSFYGTKLFLNAQLPAVTNYIERYGQMTGPPIVSVGDDLLQTPRMTIEDLIEASEKCCGSVLAWACEFDTDVGWFYQACTRCASRISFMGGQLYCDKFKVHLQVIDNTGSITFIMFDRVVFQVLGRSAQDLLDTMNNEGNSSAYPAHLDAFIDKHMLFKIEVTDANLYRNWRCYNVKKVTDDDDIINRFASLHGINLNNGSDDNNYNLLPCPLSYDTALDAIEGADSTNNEEIIVLNPSHTPTSKGLAKETLKGGDPTNNDLVIVLDNNPARRSLDLDALGDPAIKESFVPSEYEDTSFASDDDYHQFMLPANTGECSVPSNHVPIGQPSCVCPDCGAVMWFEERIKRSSKRNPRMEDDVFAFKSSIVKDIREALDNCNNPYVRTYNMVRDTLHMGGIPTIKLRILDKRGHDGRRYNLPTASEVAALIVGDFDSADFERDIIVEEWSGLLQRISTFEPAYWPLQYPLLFPRGEDGHRRDIEFRGNPRKAARKRQFITQLEWETIHQFLVDSFSTIESDRLRYLRNHQQELRADMYKGLAEAVLRGKTDATSTGKRIVLPATFVGSARYMIQNYQDAMAICSWSGYPDLFITFTCNYKWPELINHLKTYQLKPRDCPNLVSRIFKIKLDQLFKGYKKGNIFGKVKVVIYTIEFQKRGLPHAHILVFLQSIYRISDPSEIDKIISAEIPNKDDDPELFHIVSTLMIHGPCGDQNKKSPCMQKKTGHDRVTAGFYRDTNDSDGSQLIDEIKMYYDFRYLSASEAVWRIFVFDINYREPSVERLNFHLEDEQPVVYPDEASIEEIISKPYAKYTKFLAWMDANKKYPYARTRTYGEFPAKFVWNKKDRRWSPRKKGFSIGRLHFVPPGSGQKFYLRILLNYLKGLTSFDDIKTVDGVKYDNYKDTCFALGLMDGDTEFSQSIKEASYWELVLTPDQLKSYALVEIEMLLRSNNKSLKNYPDMPRPDEGAMVDEGNRLILDELNYDREMLTQEHHMLMSTMTLEQRGVYDKIMERIRVRKPAVASSGIASLLIPGGRTTHSRFNIPFNVNECSTCEIGTIDDLAHLIRRAKLIIWDEAPIIRRTLKDIMQVRDFPFGGKVVVLGGDFRQILPVIPKGTRYDIVHATINSSPLWRFCEVLTLTTNMRLLAGHTSTDLEHRRKFSKWILGIGDGSIGEMEDECIKVHIPGDLLIPKSDNPLATIVENTYPGLLQNG 1444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g02301 1444 Pfam Helitron helicase-like domain at N-terminus 725 899 IPR025476 -
Tsu03g02301 1444 Pfam Domain of unknown function DUF223 61 148 IPR003871 -
Tsu03g02301 1444 Gene3D - 271 424 IPR012340 -
Tsu03g02301 1444 Pfam PIF1-like helicase 1239 1443 IPR010285 GO:0000723|GO:0003678|GO:0006281
Tsu03g02301 1444 CDD RPA1_DBD_C 283 418 IPR013955 -
Tsu03g02301 1444 Gene3D - 129 264 IPR012340 -
Tsu03g02301 1444 SUPERFAMILY Nucleic acid-binding proteins 277 418 IPR012340 -
Tsu03g02301 1444 SUPERFAMILY Nucleic acid-binding proteins 22 126 IPR012340 -
Tsu03g02301 1444 SUPERFAMILY Nucleic acid-binding proteins 136 260 IPR012340 -
Tsu03g02301 1444 PANTHER ATP-DEPENDENT DNA HELICASE 728 957 - -
Tsu03g02301 1444 PANTHER ATP-DEPENDENT DNA HELICASE 1160 1418 - -
Tsu03g02301 1444 PANTHER ATP-DEPENDENT DNA HELICASE 980 1159 - -
Tsu03g02301 1444 PANTHER UNCHARACTERIZED 728 957 - -
Tsu03g02301 1444 PANTHER UNCHARACTERIZED 1160 1418 - -
Tsu03g02301 1444 PANTHER UNCHARACTERIZED 980 1159 - -
Tsu03g02301 1444 CDD RPA1_DBD_A_like 36 123 - -
Tsu03g02301 1444 CDD RPA1_DBD_B_like 155 259 - -
Tsu03g02301 1444 Gene3D - 20 128 IPR012340 -
Tsu03g02301 1444 Gene3D - 1237 1361 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g02301 Tsu-Chr3 25977674 25988995 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g02301 33 398 Core DNA Replication Machinery Family AT5G61000 22.943 1.08e-12 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g02301 - - itr:116020351 811.986