Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g02298 ATGATATGTGTTTATCCTGTCACTATCATATCCTTTCCTTATCCAGCTTCTTATACTATCCTGTCTCTAtcctatcctgcgcaccaaTCGAGCCGTAATAGTAGAGACATTCTTGTTGAGTTGGAAAATGGGGAGAAAATTGTTAATATTGATAATCATCATTTGGATCCTCAGCTTTGTGCATCTTTTTCTTCTGATATTTACAAACATTTGCGTGCATCTGAGGCAAAGAAAAGACCTTCCACAGACTTCATGGAGAAAAATCAGAAGGACATAAATCCCAGCTTGCGTGCTATATTGATTGACTGGCTAGTGGAGGCCCCTTTACTACAACTAGAGTGCTTGACAAACTATATCGCGGAATTATCCCTATTGGAGTACAATATGCTTTGTTATGCTCCATCACTTATAGCAGCTTCTTCAACTTTCCtagcaaaatatatgtttttccCTTCAATGAAACCATGGAATCAAAAATTGCAACATTACACTCAATACCAGTCTGCTGATTTGCGTGTTTGTGTAAAGGATCTCCACCGCCTTTGTTGCAACAACCCTAATTCTAATTTGCCTGCAATTAAGGAGAAATACAGTCAGCACAAGTATAAATATGTGGCCAAGAAGTACTACCCTCCATCAATACCTCAAGAATTTTTCCAGAATTGA 666 0.3604 MICVYPVTIISFPYPASYTILSLSYPAHQSSRNSRDILVELENGEKIVNIDNHHLDPQLCASFSSDIYKHLRASEAKKRPSTDFMEKNQKDINPSLRAILIDWLVEAPLLQLECLTNYIAELSLLEYNMLCYAPSLIAASSTFLAKYMFFPSMKPWNQKLQHYTQYQSADLRVCVKDLHRLCCNNPNSNLPAIKEKYSQHKYKYVAKKYYPPSIPQEFFQN 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g02298 221 PANTHER CYCLIN-A1-1 110 220 - -
Tsu03g02298 221 PANTHER CYCLIN-A1-1 37 106 - -
Tsu03g02298 221 SMART cyclin_7 102 180 IPR013763 -
Tsu03g02298 221 Gene3D - 111 207 - -
Tsu03g02298 221 Gene3D - 66 79 - -
Tsu03g02298 221 Pfam Cyclin, N-terminal domain 66 107 IPR006671 -
Tsu03g02298 221 Gene3D - 80 106 - -
Tsu03g02298 221 PANTHER CYCLINS 110 220 IPR039361 -
Tsu03g02298 221 PANTHER CYCLINS 37 106 IPR039361 -
Tsu03g02298 221 Pfam Cyclin, C-terminal domain 111 207 IPR004367 -
Tsu03g02298 221 CDD CYCLIN 96 179 IPR013763 -
Tsu03g02298 221 SUPERFAMILY Cyclin-like 111 213 IPR036915 -
Tsu03g02298 221 SMART Cyclin_C_2 98 211 IPR004367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g02298 Tsu-Chr3 25891190 25893688 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g02298 106 221 Core Cell Cycle Gene Families AT1G44110 67.241 1.99e-52 173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g02298 K06627 - gmx:547781 191.43