Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g02295 ATGGGTCGCCATTCTTCTTTAAAGCAAAAACTAAGAAAAGGTTTATGGTCCCCTGAAGAAGATGAGAAACTATTCAATTACATAACCATTTTTGGTGTTGGATGTTGGAGTTCAGTTCCCAAACTAGCTGGGTTGGAAAGGTGTGGAAAGAGTTGCAGATTGAGATGGATAAACTATTTGAGACCTGATTTGAAGAGAGGAATGTTCTCACAACAAGAGGAACATCTTATTATCAATCTTCATGAAGTAATTGGAAATAGGTGGGCTCAAATTGCATCACGATTACCAGGAAGAACAGATAATGAGATAAAGAATTTCTGGAATTCGAGTTTGAAGAAAAAGCTAATGAAGCAAGGAATTGATCCAACTACACATAAGCCGGTAATTAATCCTGAATATCTTATCAAAGAAAAGAAGGAAATAACAGAAAAACCATCAATGCTAATGCCATTGTCACAAAGCATTTTAACTACTCAAGAATCAGAAGCAGTTATAATGAATGATTTGAATTGTCACTATAATATTGGTGAATTAGCTTTAACAGAAGCTTCAAGAAAATTTCTCATGAATATGCCAGCATTGGATCCATTGTGCTACAATTTAAATGTGAGCAATTATTATCAGCCAAGCCTAAGACAATTTGAACAGAATTTCTTCTCTTCAATGCCTTGTTTAAATAATTCAGATCAAGTTTCAGACAATAATAATTCAGTTTCTGAATTTAGTTCTCTTTTGGTGAATGAAAGTTCAAGCAATAGTACTTCAACCATAAGTGATTATGCAGGAACATGGTGTCAAATGAGCAACATAATTGAAAATCATGAAGCTGGAGGATTAATCTCATGTGAAGAGTTAATCAGGAAGACAAGTTCATGCCAAGAACAAGAAGGACAATTGCTGACTCATAATTCAATTGATTTCAGTACCTTTCCTATAACGTCACTGTCAGAAGATCTAAGTACTCTAGCtaattttgatgtatttcaCCATTTTTGA 996 0.3373 MGRHSSLKQKLRKGLWSPEEDEKLFNYITIFGVGCWSSVPKLAGLERCGKSCRLRWINYLRPDLKRGMFSQQEEHLIINLHEVIGNRWAQIASRLPGRTDNEIKNFWNSSLKKKLMKQGIDPTTHKPVINPEYLIKEKKEITEKPSMLMPLSQSILTTQESEAVIMNDLNCHYNIGELALTEASRKFLMNMPALDPLCYNLNVSNYYQPSLRQFEQNFFSSMPCLNNSDQVSDNNNSVSEFSSLLVNESSSNSTSTISDYAGTWCQMSNIIENHEAGGLISCEELIRKTSSCQEQEGQLLTHNSIDFSTFPITSLSEDLSTLANFDVFHHF 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g02295 331 SMART sant 12 62 IPR001005 -
Tsu03g02295 331 SMART sant 65 113 IPR001005 -
Tsu03g02295 331 PANTHER MYB DOMAIN PROTEIN 55 1 325 - -
Tsu03g02295 331 Pfam Myb-like DNA-binding domain 66 109 IPR001005 -
Tsu03g02295 331 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Tsu03g02295 331 Gene3D - 68 140 - -
Tsu03g02295 331 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Tsu03g02295 331 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 115 IPR017930 -
Tsu03g02295 331 CDD SANT 69 111 IPR001005 -
Tsu03g02295 331 CDD SANT 16 60 IPR001005 -
Tsu03g02295 331 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 64 IPR017930 -
Tsu03g02295 331 PANTHER MYB TRANSCRIPTION FACTOR 1 325 - -
Tsu03g02295 331 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 35 - -
Tsu03g02295 331 SUPERFAMILY Homeodomain-like 11 107 IPR009057 -
Tsu03g02295 331 Gene3D - 10 66 - -
Tsu03g02295 331 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g02295 Tsu-Chr3 25874495 25875863 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g02295 1 128 MYB Transcription Factor Family AT1G57560 80.620 1.61e-73 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu03g02295 Myb_DNA-binding 5e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g02295 K09422 - gmx:100811140 330.872
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g02295 03 25874495 25875863 Tsu03g02295 03 25874495 25875863 ECH
Tsu04g02591 04 29268579 29270039 Tsu03g02295 03 25874495 25875863 PCT