Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g02292 ATGGCATCATCAAGCTCATACAATTCACCCTGTGCAGCCTGCAAATTCCTTCGTCGAAAATGCATGCCAGGTTGCATTTTCGCACCATACTTTCCACCGGAAGAGCCACAAAAATTCGCGAACGTTCACAAGATCTTTGGCGCAAGCAATGTGACAAAGATCCTTAACGAACTCCTTCCTCACCAGAGAGAAGATGCAGTGAATTCACTTGCTTATGAAGCGGAAGCTCGCGTAAGGGATCCCGTTTATGGCTGTGTTGGTGCTATCTCTTTCCTTCAGAGACAAGTTCAAAGGCTCCAAAAAGAACTCGATTCGGCTAATGCTGATCTTCTTCGTTTTGCTTACAGTGATTCATCTCTTCCACCTCTTCCTCCTCTCGTTGTCCCGGCTtcatttcatcatcatcaacaattaacACCTCAGAGACAATTACAATTTAGTTCAAGATTTGGTAACGGCGGTAATGTTGACGGAAGTGGTTTTTACTCTTTTCCTTATGCTATTCCATGGAATGATACCTCTTCTGATGATTTAAGTGGAGGTGTAGGAGGAAGAGGTGGAGGTGTAGGAGGAGGTAATTTGTGA 585 0.4291 MASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKILNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDSANADLLRFAYSDSSLPPLPPLVVPASFHHHQQLTPQRQLQFSSRFGNGGNVDGSGFYSFPYAIPWNDTSSDDLSGGVGGRGGGVGGGNL 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g02292 194 Coils Coil 89 109 - -
Tsu03g02292 194 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Tsu03g02292 194 Pfam Lateral organ boundaries (LOB) domain 10 107 IPR004883 -
Tsu03g02292 194 MobiDBLite consensus disorder prediction 175 194 - -
Tsu03g02292 194 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 182 - -
Tsu03g02292 194 PANTHER ELONGATED PETIOLULE 1 1 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g02292 Tsu-Chr3 25802806 25803390 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g02292 1 119 AS2 family AT5G63090 89.167 1.55e-74 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Tsu03g02292 LOB 3e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g02292 - - cam:101513806 294.278
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g02596 04 29310951 29314394 Tsu03g02292 03 25802806 25803390 ECH
Tsu03g02292 03 25802806 25803390 Tsu03g02292 03 25802806 25803390 ECH
Tsu04g02596 04 29310951 29314394 Tsu03g02292 03 25802806 25803390 PCT