Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g02273 ATGGCTTTGAACATCAACATAAAAGGGCAAATAGAGAAGGTGAATGGAAAGGAGCTAAGTTACAGCGAATTTGTTGAAAGATATATGGAGAAGAACAAGCCAGTGATTCTCACTGGACTAATGGACCATCATTGGAAGGCTTCCACTGATTGGGTCACCCCAAATGGTCAAcccaattttcaattttttttcaaccattttgattcctccaaagtTCAGGTTGCAGATTGTGATACTAGAGATTTTGGTGATCAAAAAAGGGAGGAGATGTTGGTCTCTGATTTTGTAGGACGTTGCGTTCAGATTGAGGGTTCTGCAGTTCAGTGCAATAATGAAATTGGTATAAGTAATGGTGATTCTGTATCTGTACCTTATTTGAAGGATTGGCATTTTGTGAAGGAGTATCCAGATTATGTAGCATACATCACTCCAATGTTCTTTTGTGATGATTGGCTCAACTTGTATCTCGACAACTTCAGAATGAATACTTATTCTGACAGTTCCCACCAAAATACGGAAATATGTTGCTCTGACTATCGTTTTGTTTACGTTGGAGTTAAAGGATCTTGGACTCCTCTACATGCTGATGTTTTCAGGTCGTATAGTTGGTCAGCAAATGTCTGTGGAAAGAAGAGATGGTTTTTCCTAGATCCTTCCCAACATCATCTTGTGTTCGACAGGAATCTGAAAAGTTGCGTATATAATATCTTTGATGAAGTATCTGATTCAAAATATCCTGGTTTTAAAAAGGCTGTCTGGTTAGAATGCACACAAGAAGCAGGGGAAATCATATTTGTTCCCAGCGGATGGTATCATCAAGTTCATAATTTGGAGGATACAATATCTATAAATCACAATTGGTTCAATGCCTATAACCTTTCCTGGGTGTGGAATTTACTTTTAAGGGACTACAATGAGGCCAAGGAATACATAGAAGACATCAAGGATATATGTGATGATTTTGAAGGTCTTTGCCAGCGCAATCTTGCTGCTAACACAGGGATGAATTTTTATGACTTCTTCACTTTCATTTCATACTTCTCCTTGGCCAACTTGGTGCTGCTCTGCTACATAAACGGAAGAGATGGAAGTACTACTGGAAGTTCGTCAAAAGTAGCTCAAcatttatatttgaatattGGGTCTATTAGGAAGGTCGCATCAGAGATGAAAAACTTGCCTGCTCtagaaggaaatcatgattGCATTGTGGATATGACAAAAACATTTGAAGATTCTAGGTTTTCCAAATTCTGCATACAAGTaggaaaaacatatttaacaataCACGAACAATCCAATTTGTTCTTTGATTTTGAGAGTGCTTCAATGGCTGAGTTGGTGGACCTCGGTGTTTTTAAAGCGCACACTTCTTCTCAGGTTTACACACCAGAAGACCTCATCAAATTTATAGACAATGCTGTTTCAGAACTGGGCGACATTTTCATCGAATCGTCTGTACAGCACGTTGCTTGA 1476 0.3672 MALNINIKGQIEKVNGKELSYSEFVERYMEKNKPVILTGLMDHHWKASTDWVTPNGQPNFQFFFNHFDSSKVQVADCDTRDFGDQKREEMLVSDFVGRCVQIEGSAVQCNNEIGISNGDSVSVPYLKDWHFVKEYPDYVAYITPMFFCDDWLNLYLDNFRMNTYSDSSHQNTEICCSDYRFVYVGVKGSWTPLHADVFRSYSWSANVCGKKRWFFLDPSQHHLVFDRNLKSCVYNIFDEVSDSKYPGFKKAVWLECTQEAGEIIFVPSGWYHQVHNLEDTISINHNWFNAYNLSWVWNLLLRDYNEAKEYIEDIKDICDDFEGLCQRNLAANTGMNFYDFFTFISYFSLANLVLLCYINGRDGSTTGSSSKVAQHLYLNIGSIRKVASEMKNLPALEGNHDCIVDMTKTFEDSRFSKFCIQVGKTYLTIHEQSNLFFDFESASMAELVDLGVFKAHTSSQVYTPEDLIKFIDNAVSELGDIFIESSVQHVA 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g02273 491 PANTHER 2-OXOGLUTARATE AND IRON-DEPENDENT OXYGENASE JMJD4 8 478 - -
Tsu03g02273 491 Gene3D Cupin 2 288 - -
Tsu03g02273 491 Pfam Cupin-like domain 23 287 IPR041667 -
Tsu03g02273 491 SMART cupin_9 124 304 IPR003347 -
Tsu03g02273 491 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 8 478 - -
Tsu03g02273 491 SUPERFAMILY Clavaminate synthase-like 8 316 - -
Tsu03g02273 491 ProSiteProfiles JmjC domain profile. 149 304 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g02273 Tsu-Chr3 25466725 25471887 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g02273 9 296 Glycosyltransferase AT1G78280 23.746 2.32e-13 70.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Tsu03g02273 Cupin_8 6.4e-22 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g02273 - - gsj:114409851 798.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g02273 03 25466725 25471887 Tsu03g02273 03 25466725 25471887 ECH