Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g02266 ATGGAGAACAATGAATGTCAGCCAATTGAGATTGATAGGTGTAAAGAAATTTTTCTAGGTCAAGTTGTGCTTAACAAAGATGAAGCATATAACTTGTACCAAGAGCATGCATTTAAAATGGGTTTTAGTGTAAGAAAGGGGAAGGAGCTATATTATGATgttgagaaaaaaaacacacgTTCAAAAGAGTATTATTGTTCTAAACAAGGGTTTAAGAACAATGAATCTCAAGGTGAAGTATCTTATGAAAGGGCAGATTCGAGAACAAATTGCAAGGCTATGGTGAGATTTAATGTGAGTAAGGAAGGGGTATGGAAAATTACGAAGTTGGTATTAGATCATAACCATGATCTTGTTCCAATTGAACAGAGACATTTATTACGTTCTATGAGAAATATGTCTAATGCCAAAGGAGACTTGATAAAATCTATGGTGAATGCCGGTATGCGAGTTACTGATGTTTGGAGTTATATGGGGGAAGAGGTTGGTGGATTTAGCAATCTTGTGAGTCACTTGCAAAATAGGCAAGCGCAAGATGCTATGTTCTATTATAGTGTTCAATTAGATCAAGAATCACGGTTGACCAATGTCTTCTGGAGAGATGAAAAATCTAAAGTTGATTATGATTGCTTTGGGGATGTTGTGATTTTTGACACTACTTATCGTACTAATAAGTACAACTTGATTTGTGCCCCATTTGTTGGTGTAAATCATCACTGGCAAAATGCCATGTTTGGTTGTGCTTTATTACTTGATGAGACTGCAGTTTCTTTTACTTGGTTGTTCAAGGCATTTTTAGAGAGTATGGAAAATCAACAACCAAAAACAATCTTTACTGATCAAGATGCAGCTATGGCAAAAGCAATTAGAGAGGTGATGCCAAATACAAGTCATCGACTATGTTTGTGGCATATATCTAGAAATGCTCCTTCACATTTGGGATCTCTCAATTCCAATCCACAATTTCAAAGGGTTCTTAATAAATGTATGCAAGGTTGTGACTCAGAAGAAGAATTTCAAAGTACTTGGGATGAGATGATTAATGATTACAAACTTCATGATCACAAATGGTTAAATGACATGTATAAAATTCGGCATAAGTGGAGCACTGCttataGGGCAGGTGGAAGCACTTCTATAGAGATTGGTCAATGTGATAATGTTTCATATCATGAAGTCATGTTGAATCGCATTCCTAGTAAAAAGTATAAGGTGACTTTGAATTCTTCCACTGCAACGATTAGTTGTAGTTGCCATAAGTTTGATTCCTTGGGCATTCTTTGTAGTCATGCTTTGCGGATTTATAACATCAAAGGAATTTTAAAAATTCCTAACCAATACTTCTTGAAAAgatggtcgaaaaatgcaaggtCTGTTGTTTATGAGCATAAAAGTGAAGGATATGAAGAAGATTCGACTTCCAATAGTGACGATGCTAGCCTTCTTTACCGCAATTCTATCATGAAGTCTTTCTACAATTTGGTTTTAGAAAGTCAAGATGACAAAGAAGCTCAAAAAATCATGTGGAAATTGCTTGATATTGGAGTTGAGAGGGTTCGGCAATGTGTTGGCAAAtccaatttaaattcaaatgaaAAGGCCACTGAGAACAAGTTCATgcagaatgagaaaaatgaatgtTCTGAAATTTGCAATCCTCGTTCGGCAAAGACTAAAGGAATGTCCAACGTTCGCAAGAAAGGACATTTTGAGAAACGGAAACgatcaagcacaaaagcaaaaaaaagtaaagAGAAACATAATGAAGGGGCTGAACAAAACAATGTTCTAGACTTCACAAATGATACTTCAAGAGTTGTTTATACTACTTTAGATGCACCTGTGCAGCAACATCCCTTCAGTTCGGGTTTAGATGTTCAATCTGTTTCATTTAGTGCCTTATTACAAGGAATAGACTCATATAACTATTTAAGTCAGGAAACTTCCAATCATAGTTGGTTACCTCCAAGTAGCAATTCTCAAGACAAATATTGA 1995 0.3383 MENNECQPIEIDRCKEIFLGQVVLNKDEAYNLYQEHAFKMGFSVRKGKELYYDVEKKNTRSKEYYCSKQGFKNNESQGEVSYERADSRTNCKAMVRFNVSKEGVWKITKLVLDHNHDLVPIEQRHLLRSMRNMSNAKGDLIKSMVNAGMRVTDVWSYMGEEVGGFSNLVSHLQNRQAQDAMFYYSVQLDQESRLTNVFWRDEKSKVDYDCFGDVVIFDTTYRTNKYNLICAPFVGVNHHWQNAMFGCALLLDETAVSFTWLFKAFLESMENQQPKTIFTDQDAAMAKAIREVMPNTSHRLCLWHISRNAPSHLGSLNSNPQFQRVLNKCMQGCDSEEEFQSTWDEMINDYKLHDHKWLNDMYKIRHKWSTAYRAGGSTSIEIGQCDNVSYHEVMLNRIPSKKYKVTLNSSTATISCSCHKFDSLGILCSHALRIYNIKGILKIPNQYFLKRWSKNARSVVYEHKSEGYEEDSTSNSDDASLLYRNSIMKSFYNLVLESQDDKEAQKIMWKLLDIGVERVRQCVGKSNLNSNEKATENKFMQNEKNECSEICNPRSAKTKGMSNVRKKGHFEKRKRSSTKAKKSKEKHNEGAEQNNVLDFTNDTSRVVYTTLDAPVQQHPFSSGLDVQSVSFSALLQGIDSYNYLSQETSNHSWLPPSSNSQDKY 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g02266 664 MobiDBLite consensus disorder prediction 551 598 - -
Tsu03g02266 664 ProSiteProfiles Zinc finger SWIM-type profile. 403 439 IPR007527 GO:0008270
Tsu03g02266 664 Pfam SWIM zinc finger 403 434 IPR007527 GO:0008270
Tsu03g02266 664 Pfam FAR1 DNA-binding domain 32 120 IPR004330 -
Tsu03g02266 664 SMART 26again6 414 441 IPR006564 GO:0008270
Tsu03g02266 664 PANTHER OS12G0160900 PROTEIN 14 372 - -
Tsu03g02266 664 MobiDBLite consensus disorder prediction 560 581 - -
Tsu03g02266 664 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 377 585 IPR031052 GO:0006355
Tsu03g02266 664 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 14 372 IPR031052 GO:0006355
Tsu03g02266 664 Pfam MULE transposase domain 214 308 IPR018289 -
Tsu03g02266 664 PANTHER OS12G0160900 PROTEIN 377 585 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g02266 Tsu-Chr3 25248709 25251323 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Tsu03g02266 MULE 3.4e-28 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g02266 - - lja:Lj4g3v2120630.1 603.208