Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g02247 ATGCAGTCCGCTGCTTTCACTCTCTCCTCCCCTTCTCTCCCTCTCCGCCACACCAACCCCAACCGTTTCAACCGTTCTCTTAACCTCTCCCGTCCCTCCGCCGTAAATCCCAATGGCGCTTCTTCTTCATTCGCTCGTCAATCCTGGtctctttctccttcttcttctttcaaatTCAGACCTCAACCTCTCCTTTCCTCTTCCTCTGACTCCTCCGATCTTTCTCCTCCTAAAGCTACTTCCGTTCCCGAAAGCGCCGGTGAATCCTCCGCCGCCGATTCTAGTTCCTTACTTAAAACTCTTCAACTTGGTTCCTTATTCGGTTTATGGTACCTCTTTAACATCTACTTCAATATCTACAACAAACAGGTTTTGAAGTCGTTGCATTTCCCTGTAACTGTAACTGTAGTTCAATTTGCTGTTGGAACTGTTCTTGTTAGTGTTATGTGGGCTCTTAATCTATACAAGAGACCTAAAATCACTGGTGCCATGCTTGCAGCGATATTTCCACTCGCGGTGGTGCATACTTTGGGGAATCTTTTCACTAATATGAGTCTTGGAAAGGTGGCTGTGTCGTTTACGCATACCATTAAAGCTATGGAGCCTTTCTTTTCTGTCATCCTTTCTGCCATGTTCCTTGGAGAGATGCCTACACCTTGGGTGGTTGGTTCCCTCCTGCCTATCGTTGGTGGAGTTGCATTGGCGTCTGTTACTGAGGCCTCGTTCAATTGGGCTGGATTTTGGAGTGCAATGGCTTCCAATGTGACAAACCAATCGCGTAATGTTCTTAGCAAAAAGGTCATGGTTAAGCAAGAGGAATCCTTGGACAACATAACTCTCTTCTctataataacaataatgtCCTTCTTCTTGTTAGCACCCGCAGCTATCTTCATGGAGGGTGTCAAATTTACCCCTGCTTACCTGGAATCTGTTGGCTTAAATGTCAGGCAAGTGTACACCAGATCACTTCTTGCTGCACTCTGTTTCCATGCATATCAGCAAGTTTCTTACATGATATTGCAGAGGGTATCACCTGTTACCCATTCGGTCGGAAACTGTGTGAAGCGTGTTGTCGTCATTGTGAGCTCTgtcatcatcttcaaaacagCTGTCTCTCCCTTGAATGCTGCTGgtaCCGCTATAGCTCTTGCTGGCGTTTTCCTCTATTCAAGAGTGAAGCGAATTAAGTCAAAGCCAAAGgcagtttaa 1212 0.4373 MQSAAFTLSSPSLPLRHTNPNRFNRSLNLSRPSAVNPNGASSSFARQSWSLSPSSSFKFRPQPLLSSSSDSSDLSPPKATSVPESAGESSAADSSSLLKTLQLGSLFGLWYLFNIYFNIYNKQVLKSLHFPVTVTVVQFAVGTVLVSVMWALNLYKRPKITGAMLAAIFPLAVVHTLGNLFTNMSLGKVAVSFTHTIKAMEPFFSVILSAMFLGEMPTPWVVGSLLPIVGGVALASVTEASFNWAGFWSAMASNVTNQSRNVLSKKVMVKQEESLDNITLFSIITIMSFFLLAPAAIFMEGVKFTPAYLESVGLNVRQVYTRSLLAALCFHAYQQVSYMILQRVSPVTHSVGNCVKRVVVIVSSVIIFKTAVSPLNAAGTAIALAGVFLYSRVKRIKSKPKAV 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g02247 403 SUPERFAMILY Multidrug resistance efflux transporter EmrE 290 394 - -
Tsu03g02247 403 MobiDBLite consensus disorder prediction 1 46 - -
Tsu03g02247 403 Pfam Triose-phosphate Transporter family 101 391 IPR004853 -
Tsu03g02247 403 SUPERFAMILY Multidrug resistance efflux transporter EmrE 145 237 - -
Tsu03g02247 403 MobiDBLite consensus disorder prediction 62 90 - -
Tsu03g02247 403 PANTHER SOLUTE CARRIER FAMILY 35 63 376 - -
Tsu03g02247 403 PANTHER TRIOSE PHOSPHATE/PHOSPHOENOLPYRUVATE TRANSLOCATOR-RELATED 63 376 - -
Tsu03g02247 403 TIGRFAM tpt: Tpt phosphate/phosphoenolpyruvate translocator 101 401 IPR004696 GO:0016021|GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g02247 Tsu-Chr3 24966820 24970907 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g02247 1 401 Antiporters AT5G33320 68.841 0.0 521
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g02247 K15283 - gmx:100804563 582.022
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g02628 04 29682594 29685800 Tsu03g02247 03 24966820 24970907 ECH
Tsu03g02247 03 24966820 24970907 Tsu03g02247 03 24966820 24970907 ECH
Tsu04g02628 04 29682594 29685800 Tsu03g02247 03 24966820 24970907 PCT