Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tsu03g02246 | ATGGATCTTGAGACAAAGCCTACAAAAAATTACTACTTCAAACCCAACATGAAAAATCATGATAATCCATTTTGTGGGGTTCCTTCATCTCAAGGAATCTTACAAGATTTTAATCACATTGATAAATTTAATGTCAATGGTTCATTTTTCAATCCTATTTCCGGGGTCCAAAATTTTGCTCCTAGTTATAATTTTACCAATGATTTTCATCATGATTTCAAGCCTTTTGtggagaataataataatagtggtAATGGTAATGCTTATGTTATGGATAATTTCCTATATGGAAATTATGGCTTGAACAATTTTTCTCAGAGGAATAATCAAGTGGAAATGATGATTACTAATACTAACCAAAGTAATTATTTTCCCTTTAATATTTCTCAAGAAACCAAGCCTTTGAATTTTGGTGTACCTGATGAAGTTTCACGCATTTCACCACTAAATTATTACAAAAGAATTAGCatgaacaaaaacaataagGGATATCTTAACTCAAGAAAGACACAAAAAGTTCGTAAGAGATCCAACCTTGTGAAAGGGCAATGGACAGTAGAAGAAGATGGGTTGTTGATTCAGCTGGTTGAACAATATGGATTGAGGAAGTGGTCTCATATTGCTCAGATGTTGCCTGGTAGAATTGGAAAACAGTGCAGAGAGAGGTGGCATAACCATCTAAGGCCTGATATTAAGAAGGACATATGGAGTGAAGAAGAGGACAAAATATTGATCAAAGCTCATGGAGAGATAGGAAACAAATGGGCTGAGATTGCTAAAAAGTTACCTGGAAGAACAGAAAACTCAATCAAAAACCATTGGAATGCAACTAAGAGAAGACAACATTCCAAAAGAAAGTGTCGTTCAAAGTACCCTAGAGGAACACTTTTACAAGAATACATCAAAAGCTTAAACTTAGACAAAAACCCTCCAAAAGATTATAGAAGAAAATCTTCAAATAATAATGCTAGTGAGCTGAAAAACAAAACCGACAAAAGCACAACAATATCAGCTCAGTCAcagaatcagaatcagaaaGCTGAACAATTTTGTCCTAGTGATCAGTGTTTGGTACCAAGTTGTGATTTTGACGATGTCCAGGATTTTTGTTTCGACGAGAATTTGTTTAAAGATGGGTGTAGTATTGATTCTTTGCTAGATGATATACAATGTGATCAAattatggaagaaaaaaaacattgtgATAATGTTGAGACACAGATGCCACTAGAGATTATGGAATCTATGCTTGGAGTTGAAGTTAAGAAGGAGATGGATTTGATTGAGATGGTTTTCTCAGATTAA | 1305 | 0.3234 | MDLETKPTKNYYFKPNMKNHDNPFCGVPSSQGILQDFNHIDKFNVNGSFFNPISGVQNFAPSYNFTNDFHHDFKPFVENNNNSGNGNAYVMDNFLYGNYGLNNFSQRNNQVEMMITNTNQSNYFPFNISQETKPLNFGVPDEVSRISPLNYYKRISMNKNNKGYLNSRKTQKVRKRSNLVKGQWTVEEDGLLIQLVEQYGLRKWSHIAQMLPGRIGKQCRERWHNHLRPDIKKDIWSEEEDKILIKAHGEIGNKWAEIAKKLPGRTENSIKNHWNATKRRQHSKRKCRSKYPRGTLLQEYIKSLNLDKNPPKDYRRKSSNNNASELKNKTDKSTTISAQSQNQNQKAEQFCPSDQCLVPSCDFDDVQDFCFDENLFKDGCSIDSLLDDIQCDQIMEEKKHCDNVETQMPLEIMESMLGVEVKKEMDLIEMVFSD | 434 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tsu03g02246 | 434 | CDD | SANT | 236 | 278 | IPR001005 | - | |
| Tsu03g02246 | 434 | SMART | sant | 180 | 229 | IPR001005 | - | |
| Tsu03g02246 | 434 | SMART | sant | 232 | 280 | IPR001005 | - | |
| Tsu03g02246 | 434 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 232 | 282 | IPR017930 | - | |
| Tsu03g02246 | 434 | MobiDBLite | consensus disorder prediction | 275 | 289 | - | - | |
| Tsu03g02246 | 434 | MobiDBLite | consensus disorder prediction | 269 | 289 | - | - | |
| Tsu03g02246 | 434 | Pfam | Myb-like DNA-binding domain | 181 | 227 | IPR001005 | - | |
| Tsu03g02246 | 434 | Pfam | Myb-like DNA-binding domain | 236 | 275 | IPR001005 | - | |
| Tsu03g02246 | 434 | SUPERFAMILY | Homeodomain-like | 178 | 274 | IPR009057 | - | |
| Tsu03g02246 | 434 | MobiDBLite | consensus disorder prediction | 306 | 322 | - | - | |
| Tsu03g02246 | 434 | ProSiteProfiles | Myb-like domain profile. | 176 | 227 | IPR001005 | - | |
| Tsu03g02246 | 434 | MobiDBLite | consensus disorder prediction | 306 | 341 | - | - | |
| Tsu03g02246 | 434 | CDD | SANT | 184 | 227 | IPR001005 | - | |
| Tsu03g02246 | 434 | PANTHER | BNAC03G62830D PROTEIN | 106 | 386 | - | - | |
| Tsu03g02246 | 434 | Gene3D | - | 235 | 298 | - | - | |
| Tsu03g02246 | 434 | Gene3D | - | 180 | 233 | - | - | |
| Tsu03g02246 | 434 | PANTHER | MYB PROTEIN-RELATED | 106 | 386 | - | - | |
| Tsu03g02246 | 434 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 176 | 231 | IPR017930 | - | |
| Tsu03g02246 | 434 | ProSiteProfiles | Myb-like domain profile. | 228 | 278 | IPR001005 | - | |
| Tsu03g02246 | 434 | MobiDBLite | consensus disorder prediction | 323 | 341 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Tsu03g02246 | Tsu-Chr3 | 24962863 | 24964917 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Tsu03g02246 | 70 | 389 | MYB Transcription Factor Family | AT4G18770 | 51.051 | 7.96e-97 | 295 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | MYB | Tsu03g02246 | Myb_DNA-binding | 3.2e-17 | CL0123 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tsu03g02246 | K09422 | - | gmx:102662267 | 509.99 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Tsu04g02629 | 04 | 29687797 | 29689658 | Tsu03g02246 | 03 | 24962863 | 24964917 | ECH | |
| Tsu03g02246 | 03 | 24962863 | 24964917 | Tsu03g02246 | 03 | 24962863 | 24964917 | ECH | |
| Tsu03g02246 | 03 | 24962863 | 24964917 | Tsu04g02629 | 04 | 29687797 | 29689658 | PCT |