Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g02223 ATGAAGAATTTGAACTGGTATAAACAAATTTCTAATAATGGAAAGTCTGGGAGGAGACTTTCACTTGGAGAGTACAAAAGAGCAGTTTCTTGGTCTAAGTATTTGGTGTCATCTGGTGCTGCAATAaaggatgaagaagaagatgaatggaGTGCTGATATGTCTCAGTTGTTTATTGGATCTAAATTTGCTTCCGGAAGACATAGTAGAATCTATAGAGGTGTTTATAAGCAAAAGGATGTTGCTATTAAGCTTGTGAGTCAacctgaagaagatgaagatttggcTTCTTTTCTTGAGAAGCAATTTACTTCTGAAGTTGCTTTGCTTTTGAGGTTAAGGCATCCAAATATCCTTACTTTCATCGCTGCTTGCAAGAAACCACCAGTCTTCTGCATAATTACCGAATATTTAGCCGGTGGTTCATTGAGAAAATACCTTCATCAACAAGAACCACATTCAGTTCCACTTGAACTTGTTCTGAAACTAGCCTTAGACATTGCAAGGGGAATGCAATATCTTCATTCTCAAGGGATACTCCATAGGGATCTCAAATCTGAGAATCTCCTTTTAGGAGAAGATATGTGTGTAAAAGTAGCTGATTTTGGTATCTCATGCTTAGAATCTCAGTGTGGAAGTGCTAAAGGATTTACCGGAACCTACCGTTGGATGGCTcctgaaatgatcaaagaaaaACATCATACTAAAAAAGTTGATGTGTATAGTTTTGGTATTGTTCTTTGGGAGCTTTTAACTGCATTGACTCCATTTGACAACATGACACCAGAGCAGGCTGCATATGCAGTTTCCTACAAGGTTTGTACTTGTACCATAATTTACTTCATTACATAA 852 0.3451 MKNLNWYKQISNNGKSGRRLSLGEYKRAVSWSKYLVSSGAAIKDEEEDEWSADMSQLFIGSKFASGRHSRIYRGVYKQKDVAIKLVSQPEEDEDLASFLEKQFTSEVALLLRLRHPNILTFIAACKKPPVFCIITEYLAGGSLRKYLHQQEPHSVPLELVLKLALDIARGMQYLHSQGILHRDLKSENLLLGEDMCVKVADFGISCLESQCGSAKGFTGTYRWMAPEMIKEKHHTKKVDVYSFGIVLWELLTALTPFDNMTPEQAAYAVSYKVCTCTIIYFIT 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g02223 283 PANTHER SERINE/THREONINE-KINASE HT1-LIKE PROTEIN 1 273 - -
Tsu03g02223 283 Pfam Protein tyrosine and serine/threonine kinase 59 268 IPR001245 GO:0004672|GO:0006468
Tsu03g02223 283 Gene3D Transferase(Phosphotransferase) domain 1 140 276 - -
Tsu03g02223 283 PRINTS Tyrosine kinase catalytic domain signature 135 148 IPR001245 GO:0004672|GO:0006468
Tsu03g02223 283 PRINTS Tyrosine kinase catalytic domain signature 173 191 IPR001245 GO:0004672|GO:0006468
Tsu03g02223 283 PRINTS Tyrosine kinase catalytic domain signature 219 229 IPR001245 GO:0004672|GO:0006468
Tsu03g02223 283 PRINTS Tyrosine kinase catalytic domain signature 238 260 IPR001245 GO:0004672|GO:0006468
Tsu03g02223 283 SMART serkin_6 57 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g02223 283 CDD STKc_MAP3K-like 64 272 - -
Tsu03g02223 283 Gene3D Phosphorylase Kinase; domain 1 46 138 - -
Tsu03g02223 283 PANTHER SERINE-THREONINE PROTEIN KINASE 1 273 - -
Tsu03g02223 283 SUPERFAMILY Protein kinase-like (PK-like) 47 277 IPR011009 -
Tsu03g02223 283 ProSiteProfiles Protein kinase domain profile. 57 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g02223 283 ProSitePatterns Serine/Threonine protein kinases active-site signature. 179 191 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g02223 Tsu-Chr3 24207115 24209808 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g02223 30 272 MAP Kinase Kinase Kinase AT1G62400 67.611 1.48e-118 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Tsu03g02223 PK_Tyr_Ser-Thr 1.4e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g02223 - - rcu:8289015 508.449
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g02223 03 24207115 24209808 Tsu03g02223 03 24207115 24209808 ECH
Tsu04g02639 04 29817667 29820068 Tsu03g02223 03 24207115 24209808 PCT