Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g02215 atggGTGGAAATGGTAAGCACAGATGGAAAATCTCCTTCCATCGTTCTTCCTCTCATTCTAGTAGAAACTCACAGCCTCCCAAAGAGTTTCTATGTCCTATTACCGGTTCATTAATGTCCGACCCGGTCGTTGTTACTTCGGGTCAAACATTCGAACGCCTCGCCGTCCAAATCTCCACCGAATTCAAATTCTCCCCCAAGTTAGAAGACGGAACCCGACCCGATTTCTCAACAATCATCCCCAATTTAGCTATCAAAACAACTATAACAAACTGGTGCGACAAATCACGCACCCAATACCCTCCCGCACCTGATTACACCACCGTGGAGAAGCTTATTAAAGAAGCAATGGCGGCGGAGAAGGAAGATCCAATTAGGACTTCTGAAAAGGAGCTGCTCAACGCGGTGGCGGATAATCCACCGGTGATATTCTCCCACGCTGCTACTGAGTTAGGTCCACGTATCAACCGTTTCAACTCGGGATCTTCCTCTGAGGAATCGGAACATGCTGCGGGTGCACTTTTTAGTTTGGCTTTGGATGATGATAACAAGATGGCGATTGGTGTTCTCGGCGCATTGCAGCCGCTAATGCATGCGCTGAGGTCTGATTCCGAGCGAACTCGCCATGACTCGGCACTTGCGCTCTATCATTTGACTCTAGTTCAGAGTAACAGAGTCAAGCTTGTGAAACTCGGGGTGGTTCCGACTTTGCTTTCGATGGTGATGACAGGGACGATGGCGAGTAGGGTGTTGTTGATTTTATGCAATCTTGCTATGTCTGTGGAGGGAAGAACTGCAATGCTGGACGCCAATGCGGTGGAGTGTATGGTGAGTTTGTTGAGGGGGAACGAGTTGGACTCGGAGGCGACTCGAGAAAATTGTGTAGCGGCGTTGTATGCGTTGAGTCATGGAAGTTTGAGGTTCAAAGGGTTGGCGAAGGAAGCGAAAGCTGTGGAGGTTTTGAGGGTGATTGAAGAGACAGGGACGGAGAGGGCGAGGGAGAAGGCTAAAAGGGTGTTGCAGAAGATGAGGGGGtttgaagatggtgatgatgaagatgattctgGGTTTGATAGTCTTTTTGAATCGAGCAGGTTGACTCGAACGAGGTACCGAGGTGCTGGAGCTAGGAACAACAACCTTGTCAATTCAACTACATTTTAG 1164 0.4768 MGGNGKHRWKISFHRSSSHSSRNSQPPKEFLCPITGSLMSDPVVVTSGQTFERLAVQISTEFKFSPKLEDGTRPDFSTIIPNLAIKTTITNWCDKSRTQYPPAPDYTTVEKLIKEAMAAEKEDPIRTSEKELLNAVADNPPVIFSHAATELGPRINRFNSGSSSEESEHAAGALFSLALDDDNKMAIGVLGALQPLMHALRSDSERTRHDSALALYHLTLVQSNRVKLVKLGVVPTLLSMVMTGTMASRVLLILCNLAMSVEGRTAMLDANAVECMVSLLRGNELDSEATRENCVAALYALSHGSLRFKGLAKEAKAVEVLRVIEETGTERAREKAKRVLQKMRGFEDGDDEDDSGFDSLFESSRLTRTRYRGAGARNNNLVNSTTF 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g02215 387 SUPERFAMILY ARM repeat 151 344 IPR016024 -
Tsu03g02215 387 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 38 161 376 - -
Tsu03g02215 387 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 38 1 127 - -
Tsu03g02215 387 SMART arm_5 260 303 IPR000225 GO:0005515
Tsu03g02215 387 SMART arm_5 180 220 IPR000225 GO:0005515
Tsu03g02215 387 Gene3D - 150 351 IPR011989 -
Tsu03g02215 387 SMART Ubox_2 29 92 IPR003613 GO:0004842|GO:0016567
Tsu03g02215 387 ProSiteProfiles U-box domain profile. 25 99 IPR003613 GO:0004842|GO:0016567
Tsu03g02215 387 SUPERFAMILY RING/U-box 12 101 - -
Tsu03g02215 387 Pfam Armadillo/beta-catenin-like repeat 180 219 IPR000225 GO:0005515
Tsu03g02215 387 PANTHER U BOX DOMAIN-CONTAINING 1 127 - -
Tsu03g02215 387 PANTHER U BOX DOMAIN-CONTAINING 161 376 - -
Tsu03g02215 387 Pfam U-box domain 27 96 IPR003613 GO:0004842|GO:0016567
Tsu03g02215 387 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 102 IPR013083 -
Tsu03g02215 387 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g02215 Tsu-Chr3 24102327 24103985 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g02215 155 387 U-box Gene Family AT5G65200 59.756 5.00e-83 262
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g02215 - - gmx:100815075 320.857
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g02215 03 24102327 24103985 Tsu03g02215 03 24102327 24103985 ECH