Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g02209 ATGGGAATTACAGAGGAGAGAGTTGTGGCGATTATCATGGTTGGAGGACCCACCAAAGGTACTCGATTCCGTCCATTATCATTCAACATTCCTAAACCACTCTTTCCATTAGCCGGACAACCCATGGTTCATCATCCTATCTCCGCTTGTCAAAAAATTCCTAATTTGGCTAAGATTTATCTTATTGGATTCTACGAAGAGCGCGAATTCGCATTATATGTATCTTCAATCTCCAACGACCTTAAATTACCTGTTAGGTACTTGAAGGAAGATAAACCACATGGTTCAGCTGGTGGTCTTTATAACTTTAAAGATCTCATCATGGAAGAAGATCCGTCACATATTTTCTTGCTCAATTGTGATGTTTGCTGCAGTTTTCCACTCCCACAAATGCTTGATGCTCACAAAAAATATGGTGGCATGGGAACAATACTAGTTGTCAAGGTTCCTCCGGAGTCAGCGAGCGAATTTGGGGAATTGGTAGCTGATCCAGTCACTAATGAACTCTTGCATTACACAGAGAAACCTGAAACTTTTGTTAGTGATCGTATAAACTGTGGTGTGTATATATTTACACCAGATATCTTTACTGCCATTGAGGGTGTTTCTTCTCAGAGGAAAGACAGAGCTAACTTAAGACGTGTCTCCAGCTTTGAAGCAATGCTGCCAGACACAAGGAGTCTTACCGCCAATTATGTCAGATTGGATCAAGATATCCTCTCACCTCTTGCAGGGAAGAAACAGttgtatatatatgaaacaATGGATTTTTGGGAACAAATCAAAACTCCTGGAATGTCCATAAAATGTTCGGCCTTGTATCTTTCACAATTTCGTCACACAGCCCCCCACCTATTAGAAAATGGAGATGGTATTAAGAAAGCCTGCATCATTGGTGATGTTTATATTCACCCATCAGCAAAAGTGCATCCGTCTGCAAAGATTGGACCTGGCGTATCAATATCAGCAAATGCTCGTATAGGAGCTGGTGCAAGGCTCATAAATTGTATAGTCCTTGATGATGTCGAAATCAAGGAGAATGCTGTTGTTATTCATGCAATTGTTGGATGGAAATCCTCCATTGGACGATGGGCCCGTGTCCAGGGTCGTGGAGATTACAATGCAAAACTTGGGGTCACTATTCTTGGTGAATCTGTTGCTGTTGAGGATGAGGTAGTGGTTATTAATAGCATTGTCCTTCCACACAAGACCTTAAATGTCGGCGTTCAAGATGAGATTATATTATAG 1248 0.4095 MGITEERVVAIIMVGGPTKGTRFRPLSFNIPKPLFPLAGQPMVHHPISACQKIPNLAKIYLIGFYEEREFALYVSSISNDLKLPVRYLKEDKPHGSAGGLYNFKDLIMEEDPSHIFLLNCDVCCSFPLPQMLDAHKKYGGMGTILVVKVPPESASEFGELVADPVTNELLHYTEKPETFVSDRINCGVYIFTPDIFTAIEGVSSQRKDRANLRRVSSFEAMLPDTRSLTANYVRLDQDILSPLAGKKQLYIYETMDFWEQIKTPGMSIKCSALYLSQFRHTAPHLLENGDGIKKACIIGDVYIHPSAKVHPSAKIGPGVSISANARIGAGARLINCIVLDDVEIKENAVVIHAIVGWKSSIGRWARVQGRGDYNAKLGVTILGESVAVEDEVVVINSIVLPHKTLNVGVQDEIIL 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g02209 415 Pfam Nucleotidyl transferase 10 222 IPR005835 GO:0009058|GO:0016779
Tsu03g02209 415 PANTHER SUGAR-1-PHOSPHATE GUANYL TRANSFERASE 3 415 - -
Tsu03g02209 415 CDD M1P_guanylylT_A_like_N 10 274 - -
Tsu03g02209 415 SUPERFAMILY Nucleotide-diphospho-sugar transferases 9 357 IPR029044 -
Tsu03g02209 415 Gene3D Hexapeptide repeat proteins 281 412 - -
Tsu03g02209 415 PANTHER ADP-GLUCOSE PYROPHOSPHORYLASE FAMILY PROTEIN 3 415 - -
Tsu03g02209 415 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 3 278 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g02209 Tsu-Chr3 24023162 24028313 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g02209 4 350 Eukaryotic Initiation Factors Gene Family AT2G34970 21.964 5.44e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g02209 K00966 - gmx:100817201 753.051
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g02209 03 24023162 24028313 Tsu03g02209 03 24023162 24028313 ECH