Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g02195 ATGGATTCGTTTGACGCTGATAcaaatggaaatggaaatggaaatggGAAGGAGGAGTCTTTGCCTCCGCCACCTCCAGTTGTCCCCTCAGATGTGGTACCTCTCAAAGCTGAGGAGGTGATCGCAGCCCCTCTTGAAcctgtgaagaaaaaaaatacccGACATCCAATAGCCAGACGTGGTCTGGGATCAAAAGGAAATAAGATACCTCTTTTAACTAATCACTTCAATGTTAATATTGGTAACAATGATGGATTTTTTTTCCAGTACAGTGTGTCTTTTGCTTATGAAGACGGACGCCCTGTGGAAGGTAAGGGTGTCGGAAGGAAGATAATGGATAGGGTGCAGGAGACATATGCTTCTGACTTGAATGGCAAGGAATTTGCATATGACGGGGAGAAAAGTCTGTTTACTATCGGCTCTCTTCCTCAGAACAAACTTGAGTTTGAAATTGTTTTAGAGGATGTTACATCTAACAGAAATACTGGCAATCGTAGTCCTGATGCTAATGGGGACAATGAGAGTGACAAAAAGAGGGTGCGACGCCCGTACCATGCAAAGACATTTAAAGTTGAGATTAGCTTTGCTACTAAAGTTCCTATGTATGCCATTGCAAGTGCGTTACGCGGTCAGGAAACAGAGAATTTCCAAGAAGCCGTTAGAGTTCTTGATATCATACTGAGACAACATGCTGCTAAGCAGGGCTGCCTACTTGTGCGCCAGAATTTCTTCCACAATGATCCTAAGAATTTTGCTGATGTGGGGGGTGGTGTTCTAGGCTGTAGAGGATTCCATTCAAGTTTTAGAGCTACACAAAGTGGACTGTCTCTTAACATAGATGTCTCAACTACCATGATAATTCAACCTGGCCCTGTGGTGGATTTCTTGATTTCCAATCAAAATGTGAGAGATCCATTTAGTCTTGACTGGACAAAGGCCAAAAGGACACTAAAAAATCTGAGGGTTAAAACTCATCCATCCAATCAAGAGTTTAAAATTTGTGGACTCAGTGACGTCCCATGCAAAGAGCTTAcTTTTACTTTGAAGAAAAGGGATGGGGATGGTACTGAAGAAATGACTGTTTTGGACTATTTTACTAATGTCCGGAAGATAGATCTGCGTTACTCTGCGGATCTTCCATGTATTAATGTTGGCAGACCTAAACGGCCAACATATTTCCCCATTGAGCTGTGTGAATTGGTATCGTTACAACGATATACAAAAGCTCTGTCTACCCTTCAAAGGGCGTCCTTAGTGGAGAAATCCAGACAGAAGCCACAAGAGAGGATGAGAATTTTGTCGGATGCACTTAAAACCAGCAACTATGGTGCTGAACCTCTGCTACAAAGTTGTGGAGTTTCTATAAGCACAAGCTTTACTCAAGTGGAGGGACGTGTTTTGCCTGCTCCTAggTTGAAGTTCGGAAATGGTGAAGAGTTCAGTCCAAGAAATGGACGATGGAACTTCAACAACAAGAAATTTGTGCAGCCTACCAAGATAGAGAAATGGGCTGTAGCAAACTTTTCTGCACGATGTGATGTGCGAGGACTTATTAGGGATGTAATTAGAATTGGTGGGATGAAAGGAATTATGATTGACCAACCATTTGATGTGTTTGAAGAAAATCCCCAGTTTAGACGTGCCCCACCCATGGTTAGAGTGGAGAAGATGTTTGAGGATATTCAGTCTAAACTTCCTGGGGCTCCTCAGTTCCTTCTCTGTTTGCTTCCTGATCGAAAAAACTGTGAAATTTATGGTCCATGGAAAAAGAAGAATCTTGCTGATTTTGGAATCGTTAATCAGTGCATGTGTCCTCTAAGAGTCAATGATCAGTATCTGGGCAATATTATGTTGAAGATCAATGCCAAGCTTGGTGGGCTGAACTCATTGTTGGGTGTTGAAAGTACTCCTTCTCTTCCTATTGTTTCCAAAGCACCCACTCTCATTCTAGGAATGGATGTGTCACATGGCTCACCAGGGCAGACTGATATTCCTTCAATTGCGGCTGTTGTCAGCTCTAGACAGTGGCCTCTGATTTCAAAATATAGAGCATGTGTTCGCACACAATCTGCAAAAGTTGAAATGATAGATAATTTGTTCAAGAAAGTATCAGATACCGAGGATGAAGGCATCATGAgGGAACTCTTACTCGATTTCTATAATAGTTCTGGGAAGAGAAAACCAGATAATATAATCATTTTCAGGGACGGTGTTAGTGAATCCCAATTCAATCAAGTCCTGAATATCGAACTTGACCAGATCATTGAGGCATGCAAATTTCTTGATGAAAAATGGAACCCAAAATTTGTGGTCATTGTTGCTCAGAAGAACCATCACACAAGATTCTTCCAGCCCAATTCTCCTGACAATGTCCCACCTGGAACTGTTATTGATAACAAAATTTGTCATCCAAGAAATTATGATTTCTACCTCTGTGCTCATGCTGGGATGATAGGCACCAGCAGGCCTACTCACTACCATGTGCTGCTTGATGAGATTGGTTTCTCCCCTGATGAACTTCAGGAGCTTGTTCATTCTCTATCATATGTTTACCAGAGGAGCACAACAGCTATTTCAGTTGTTGCACCTATATGCTATGCACACTTGGCTGCAACTCAGTTGGGACAGTTCATGAAATTCGAGGATAAATCTGAGACATCCTCAAGCCATGGTGGGCTAAGTGCTGCAGGAGCTGTACCTGTCCCTCAGCTCCCAAAATTGCAGGACAACGTTGCAAACTCTATGTTCTTCTGTTGA 2757 0.416 MDSFDADTNGNGNGNGKEESLPPPPPVVPSDVVPLKAEEVIAAPLEPVKKKNTRHPIARRGLGSKGNKIPLLTNHFNVNIGNNDGFFFQYSVSFAYEDGRPVEGKGVGRKIMDRVQETYASDLNGKEFAYDGEKSLFTIGSLPQNKLEFEIVLEDVTSNRNTGNRSPDANGDNESDKKRVRRPYHAKTFKVEISFATKVPMYAIASALRGQETENFQEAVRVLDIILRQHAAKQGCLLVRQNFFHNDPKNFADVGGGVLGCRGFHSSFRATQSGLSLNIDVSTTMIIQPGPVVDFLISNQNVRDPFSLDWTKAKRTLKNLRVKTHPSNQEFKICGLSDVPCKELTFTLKKRDGDGTEEMTVLDYFTNVRKIDLRYSADLPCINVGRPKRPTYFPIELCELVSLQRYTKALSTLQRASLVEKSRQKPQERMRILSDALKTSNYGAEPLLQSCGVSISTSFTQVEGRVLPAPRLKFGNGEEFSPRNGRWNFNNKKFVQPTKIEKWAVANFSARCDVRGLIRDVIRIGGMKGIMIDQPFDVFEENPQFRRAPPMVRVEKMFEDIQSKLPGAPQFLLCLLPDRKNCEIYGPWKKKNLADFGIVNQCMCPLRVNDQYLGNIMLKINAKLGGLNSLLGVESTPSLPIVSKAPTLILGMDVSHGSPGQTDIPSIAAVVSSRQWPLISKYRACVRTQSAKVEMIDNLFKKVSDTEDEGIMRELLLDFYNSSGKRKPDNIIIFRDGVSESQFNQVLNIELDQIIEACKFLDEKWNPKFVVIVAQKNHHTRFFQPNSPDNVPPGTVIDNKICHPRNYDFYLCAHAGMIGTSRPTHYHVLLDEIGFSPDELQELVHSLSYVYQRSTTAISVVAPICYAHLAATQLGQFMKFEDKSETSSSHGGLSAAGAVPVPQLPKLQDNVANSMFFC 918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g02195 918 Pfam Mid domain of argonaute 481 561 IPR032473 -
Tsu03g02195 918 MobiDBLite consensus disorder prediction 1 30 - -
Tsu03g02195 918 SMART Piwi_a_2 571 879 IPR003165 GO:0003676
Tsu03g02195 918 Gene3D - 466 632 - -
Tsu03g02195 918 CDD PAZ_argonaute_like 289 401 - -
Tsu03g02195 918 Pfam N-terminal domain of argonaute 68 227 IPR032474 -
Tsu03g02195 918 Gene3D paz domain 283 406 - -
Tsu03g02195 918 ProSiteProfiles Piwi domain profile. 571 879 IPR003165 GO:0003676
Tsu03g02195 918 PANTHER TRANSLATION INITIATION FACTOR 2C, PUTATIVE-RELATED 2 917 - -
Tsu03g02195 918 SUPERFAMILY Ribonuclease H-like 556 877 IPR012337 -
Tsu03g02195 918 MobiDBLite consensus disorder prediction 1 16 - -
Tsu03g02195 918 Gene3D - 638 918 IPR036397 GO:0003676
Tsu03g02195 918 Pfam PAZ domain 293 418 IPR003100 GO:0005515
Tsu03g02195 918 Pfam Argonaute linker 1 domain 239 287 IPR014811 -
Tsu03g02195 918 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 2 917 - -
Tsu03g02195 918 MobiDBLite consensus disorder prediction 158 181 - -
Tsu03g02195 918 Pfam Piwi domain 572 879 IPR003165 GO:0003676
Tsu03g02195 918 SUPERFAMILY PAZ domain 284 442 IPR036085 GO:0005515
Tsu03g02195 918 CDD Piwi_ago-like 446 873 IPR045246 -
Tsu03g02195 918 Pfam Argonaute linker 2 domain 428 474 IPR032472 -
Tsu03g02195 918 SMART DUF1785_2 237 289 IPR014811 -
Tsu03g02195 918 ProSiteProfiles PAZ domain profile. 314 402 IPR003100 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g02195 Tsu-Chr3 23707680 23714993 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g02195 59 918 Eukaryotic Initiation Factors Gene Family AT5G43810 35.642 4.86e-169 516
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g02195 K11593 - gmx:100820376 1602.8