Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g02173 ATGAACTGCTTTGAACTACCTTCAAACATTGCAAAGAGACAAAACTGCTCCTGTATTTTTTTGTGCGCCATGGATCACAATCATAAACTAGCAACAACAATTGAAGGAAGATCAGAAGGACAACCTATAAGATGTAAAGCTGCGGTTGCAAGAAAACCTGGTGAAGCATTGGTCATAGAAGAGATTATTGTGGCACCACCAATGCCTCGTGAGGTTCGGATTCGTATTCTATGTACATCTCTCTGCCACAGTGACATCACTGTTTGGAGGATGCAGGAATATCCTGGCATTTTCCCAAGAATTTTGGGTCATGAGGCAACTGGGGTTGTGGAAAGTGTAGGGAAAGATGTAACCGAAGTTACAAAAGGAGATACGGTTATTCCAATTTTCCTTCCAGATTGCGAGGAGTGTATAGATTGCAAATCAACCAAGAGCAACTGTTGTACTAATTTCCCATTCAAGGTGTCTCCTTGGATGCTTAGACATGAGAGAACTAGATTCACAGATCTAAATGGAGAGATCATATACCATTTcatgtttgtttcaagtttcaGCGAGTACACTGTGGTCGACATCGCCAATGTAATAAAGATTGATCCACGAATCCCTCCTGATAGGGCTTGTCTTCTCAGTTGTGGTATTTCAACAGGGGTAGGTGCTGCTTGGAGAACAGCAAGTGTGGAGCCAGGATCTACAGTTGCTATTTTTGGACTGGGATCTATTGGATTGGCAGTTGCAGAGGGAGCTAGGGTTTGTGGAGCAACTAGAATTATTGGTGTGGATGTCAACcctgaaaaatttgaaattgGAAAAAAGTTTGGACTCACAGACTTCGTCCATGCTGTTGAATGTGGGAACAAACCTGTGAGCCAGGTTATCATAGAGATGACTGATGGCGGAGCAGATTATTGCTTTGAATGTGTTGGTATGACATCATTGGTGCATGAAGCATATGCTTCTTGTAGAAAGGGCTGGGGAAAAACAATTGTTGTAGGAGTGGACAAACCAGGAGCTAGGTTGAGCCTCAGTTCTAGTGAGGTCCTACATGATGGAAAGAGCCTTATGGGATCCTTATATGGAGGACTCAAACCCAAATCTCATGTGCCAATTCTGCTTAAACGGTACATTGACAAgGAACTGCAGTTGGATGAATTTGTGACTCATGAGGTGGAATTTAAGGACATCAATAAAGCATTTGATCTATTGAATAAAGGACAGTGTCTTCGATGTGTGATTTGGATGGAAAAATGA 1251 0.4117 MNCFELPSNIAKRQNCSCIFLCAMDHNHKLATTIEGRSEGQPIRCKAAVARKPGEALVIEEIIVAPPMPREVRIRILCTSLCHSDITVWRMQEYPGIFPRILGHEATGVVESVGKDVTEVTKGDTVIPIFLPDCEECIDCKSTKSNCCTNFPFKVSPWMLRHERTRFTDLNGEIIYHFMFVSSFSEYTVVDIANVIKIDPRIPPDRACLLSCGISTGVGAAWRTASVEPGSTVAIFGLGSIGLAVAEGARVCGATRIIGVDVNPEKFEIGKKFGLTDFVHAVECGNKPVSQVIIEMTDGGADYCFECVGMTSLVHEAYASCRKGWGKTIVVGVDKPGARLSLSSSEVLHDGKSLMGSLYGGLKPKSHVPILLKRYIDKELQLDEFVTHEVEFKDINKAFDLLNKGQCLRCVIWMEK 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g02173 416 Pfam Zinc-binding dehydrogenase 241 361 IPR013149 -
Tsu03g02173 416 Gene3D - 48 409 - -
Tsu03g02173 416 SUPERFAMILY GroES-like 38 225 IPR011032 -
Tsu03g02173 416 PANTHER ALCOHOL DEHYDROGENASE 38 413 - -
Tsu03g02173 416 PANTHER ALCOHOL DEHYDROGENASE-LIKE 7 38 413 - -
Tsu03g02173 416 SUPERFAMILY GroES-like 365 413 IPR011032 -
Tsu03g02173 416 Pfam Alcohol dehydrogenase GroES-like domain 70 198 IPR013154 -
Tsu03g02173 416 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 103 117 IPR002328 GO:0008270|GO:0016491
Tsu03g02173 416 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 202 377 IPR036291 -
Tsu03g02173 416 Gene3D - 217 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g02173 Tsu-Chr3 23271664 23275575 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g02173 70 215 Monolignol Biosynthesis Gene Families AT4G37970 29.054 7.51e-11 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g02173 K00121 - gmx:100817521 679.093
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g02173 03 23271664 23275575 Tsu05g03558 05 47093037 47096743 PCT