Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g02165 atggCGGCTCTTACCTCTCTCCCTCCTTTTCCCCACCATACTCTCCTCTTCCTCCGCTCAAAATCAACCAGATTTTCCGTTTCAGCTTCAGCGCTTTCAGCCTCAGGAAATGATGGATCTAATTCTAGAGTGCCTCATACAAGAAGGAGAAAAATCGAAGGTCCACGAAAAAGTATGGAAGATTCTGTTCAACGTAAGATGGAGCAATTTTATGAAGGAAACGATGGGCCGCCTTTACGCGTTCTTCCTATTGGTGGTTTAGGTGAAATTGGAATGAATTGTATGCTTGTAGGGAATCATGACCGTTATATTCTCATCGATGCTGGTATCATGTTTCCTGACTATGATGACCTTGGAGTACAAAAGATTATACCTGATACAACATTTATAAGAAAATGGAGCCACAAAATTGAAGCGCTTGTTATAACGCATGGTCATGAAGATCATATTGGTGCCTTGCCTTGGGTCATCCCAGCATTGGATCCCAATACACCAATTTTTGCATCATCCTTTACAATGGAGCTTATTAAAAAACGTTTGAAGGAGCATGGTATTTTCCTTACATCTAGACTCAAAACATTTAGAACAAAGAACAAGTTTGTGGCTGGGCCATTTGAGATAGAACCTATCAGGGTGACTCATTCTATTCCTGACTGTTGTGGATTGGTTCTTCGTTGTTCCGATGGTACCATTCTTCACACTGGGGATTGGAAGATTGACGAGACACCACTTGATGGGAAAGTTTTTGATCGAGAGGCTTTAGAGGAACTCTCTAAAGAAGGAGTAACATTGATGATGAGTGATTCGACAAATGTGCTCTCACCTGGAAGGACAACAAGCGAATCTGTTGTGGCAGATTCATTATTGAGGCATATTTCAGATTCCAAGGGAAGGGTTATTACAACCCAGTTTGCATCAAATCTACACAGGATTGGAAGTGTGAAAGCTGCTGCTGATTTAACTGGCAGAAAGTTGGTATTTGTTGGCATGTCTTTAAGGACATACTTAGAAGCAGCTTGGAAGGATGGAAAGGCTCCATTTGATCCATCCACTCTGGTGAAAGCAGAGGATATTGATGCATATGCACCTAAGGATCTGCTTATTGTAACAACAGGATCTCAAGCAGAGCCACGTGCTGCCTTAAATCTTGCATCTTATGGAAGTAGCCATGCTTTCAAACTAACCAAGGAAGATATCATTTTGTATTCTGCGAAGGTTATCCCCGGTAATGAGTCTCGTGTGATGGAAATGATGAATCGCATATCAGAGATTGGATCAACAATAGTTATGGGGAGCAATAAATTTTTGCACACATCTGGTCATGCATATCGTGGAGAATTGGAGGAAGTGCTTAGAATAGTGAAGCCGCAACATTTTCTTCCTGTACATGGAGAATACTTGTTCCTTAAGGAGCACGAGTCACTTGGAAAATCAACCGGCATTCATCATACTGCGGTTATTAAGAACGGAGAAATGCTTGGTGTTTCACATTTGAGAAACAGAAAGGTTCTTTCTAATGGTTTCATTTCCCTTGGAAAAGAGAATTTACAGTTGAAATATAGTGACGGTGACAAAGCATTTGGTACATCCAGTGAACTCTGCATTGATGAAAGATTGAGAATTGCGTTAGATGGCATCATTGTGATTAGCATGGAAATATCTCGCCCTAAAAATTTAGAAAGCTTGGCTGAAAACACCTTAAAAGGGAAGATAAGAATTACCACCAGATGCCTATGGCTAGACAAAGGGAAGCTGTTAGATGCACTACATAAAGCTGCTCATGCAGCCCTTTCTAGCTGTCCCGTTAAAAGTCCACTGGTTCACATGGAAAGAACTGTGTCTGAGGTGTTGAGGAAGATGGTGAGAAAGTACAGTGGTAAACGGCCCGAAGTAATTGCCATTGCCACAGAAAGTCCCGGAGCTGTTTTTGCTGATGAGATAAACAAGAAATTGTCTGGCAAATCCCACGTTGGTCCTGGAATACCAACATTAAGAAAAAAAGTGGATGAACATAGAAAGGAAAACCAGTCCACCAAACTGCAAACAACAGATGATGACATTGATATTGAAGGACTATTACCCGAGAATGACACCACTACAAGTCGAGCTAAGGGCGATTTACCTGACTCAGAGGATTCAGTTGAATTTTGGAAACAATTTGTTGCATCATCAGTTGAGAAGTCAAACAAAGCTAACAATGGTTATGTTTCACGAAAGGAGTATAAGTCCAACGTGAAGAAAGATGATTCTGAAGACATCGATGAAGTCAAGTTTGAAGAAATGTCTAATGCTGAGCCAGAGTCTTCGAAATcagtaaagaaaaataaatggaaagCTGAGGAAGTTAAGAAGCTGATTGATTTACGGAGTGACCTCCGCGATAGATTTAAAGTTGTGAAGGGACGGATGGCTCTCTGGGAAGAGATATCTCAGAGCTTGTTGGCTGATGGGATCAGCAGAAGTCCTGGACAATGCAAATCTCTATGGACATCCTTGGTACTGAAATATGAGGACATCAAGAATGGGAAGGATACCAGAAAAAATTGGCAATATCTTGAGGACATGGAAAGGATATTGTCTAGTGATGAAGAACCCGCAACAAATTGA 2607 0.4081 MAALTSLPPFPHHTLLFLRSKSTRFSVSASALSASGNDGSNSRVPHTRRRKIEGPRKSMEDSVQRKMEQFYEGNDGPPLRVLPIGGLGEIGMNCMLVGNHDRYILIDAGIMFPDYDDLGVQKIIPDTTFIRKWSHKIEALVITHGHEDHIGALPWVIPALDPNTPIFASSFTMELIKKRLKEHGIFLTSRLKTFRTKNKFVAGPFEIEPIRVTHSIPDCCGLVLRCSDGTILHTGDWKIDETPLDGKVFDREALEELSKEGVTLMMSDSTNVLSPGRTTSESVVADSLLRHISDSKGRVITTQFASNLHRIGSVKAAADLTGRKLVFVGMSLRTYLEAAWKDGKAPFDPSTLVKAEDIDAYAPKDLLIVTTGSQAEPRAALNLASYGSSHAFKLTKEDIILYSAKVIPGNESRVMEMMNRISEIGSTIVMGSNKFLHTSGHAYRGELEEVLRIVKPQHFLPVHGEYLFLKEHESLGKSTGIHHTAVIKNGEMLGVSHLRNRKVLSNGFISLGKENLQLKYSDGDKAFGTSSELCIDERLRIALDGIIVISMEISRPKNLESLAENTLKGKIRITTRCLWLDKGKLLDALHKAAHAALSSCPVKSPLVHMERTVSEVLRKMVRKYSGKRPEVIAIATESPGAVFADEINKKLSGKSHVGPGIPTLRKKVDEHRKENQSTKLQTTDDDIDIEGLLPENDTTTSRAKGDLPDSEDSVEFWKQFVASSVEKSNKANNGYVSRKEYKSNVKKDDSEDIDEVKFEEMSNAEPESSKSVKKNKWKAEEVKKLIDLRSDLRDRFKVVKGRMALWEEISQSLLADGISRSPGQCKSLWTSLVLKYEDIKNGKDTRKNWQYLEDMERILSSDEEPATN 868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g02165 868 Gene3D - 280 430 IPR042173 -
Tsu03g02165 868 SMART Lactamase_B_5a 91 288 IPR001279 -
Tsu03g02165 868 ProSiteProfiles Myb-like domain profile. 769 833 IPR001005 -
Tsu03g02165 868 MobiDBLite consensus disorder prediction 31 62 - -
Tsu03g02165 868 PANTHER RNA-METABOLISING METALLO-BETA-LACTAMASE 2 862 - -
Tsu03g02165 868 MobiDBLite consensus disorder prediction 663 686 - -
Tsu03g02165 868 CDD RNaseJ_MBL-fold 82 493 - -
Tsu03g02165 868 Pfam Myb/SANT-like DNA-binding domain 775 858 IPR044822 -
Tsu03g02165 868 Gene3D - 83 495 IPR036866 -
Tsu03g02165 868 PANTHER RIBONUCLEASE J 2 862 - -
Tsu03g02165 868 MobiDBLite consensus disorder prediction 43 62 - -
Tsu03g02165 868 SUPERFAMILY Metallo-hydrolase/oxidoreductase 79 493 IPR036866 -
Tsu03g02165 868 MobiDBLite consensus disorder prediction 654 710 - -
Tsu03g02165 868 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 433 482 IPR011108 -
Tsu03g02165 868 CDD GT1 775 840 - -
Tsu03g02165 868 Gene3D - 777 837 - -
Tsu03g02165 868 Pfam Beta-lactamase superfamily domain 102 238 IPR001279 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g02165 776 861 Trihelix Transcription Factor Family AT2G38250 31.818 4.75e-08 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Tsu03g02165 Lactamase_B_2 5e-10 CL0381
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g02165 - - gmx:100783850 1379.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g02165 03 23179470 23191095 Tsu03g02165 03 23179470 23191095 ECH