Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g02150 ATGAAGAGTGAAAAATCAACCAAAGATGAGATTACAAAAGTGATTAATGAAATTGAAACTAAACAATGTGAGATGGAAAAGggaaaggaaaagatgtttgtTGAAGATGTTTCCATGCAACAAAGTCCTCTCAAGAAGATTTGTATCCCTCAACACCAAGACACAAATCAATCATCCTCTCATCAACCTCCTTCATCTAAAATAGTTTTTCCTTTTGCTTTTGAAGGTTCTCAATTTCCAATATCATTCCcacacaaatcaaaaacaacaaattttttgCCTCCTTTTTCTCCACCTTTTGAGCCCCAACAAAACATGGGGTATCAACTATCGCCATTTTCAGCTTCGAATTCTGTTTTACCTCGCCAACGACAACAGATTCAGAATAAGCAGCTTCTTAGGCCTCAAACGCGGCCTTTGAATGGTACAAAACTGTATAGAGGAGTGAGGCAACGACATTGGGGAAAATGGGTGGCTGAGATTCGTCTCCCTCGAAATAGAACTCGTCTCTGGCTTGGAACATTTGACAATGCCGAAAATGCTGCCATGGCATATGATCGCGAGGCTTTTAAGCTAAGAGGAGAAAATGCTAAGCTCAATTTCCCTGAACTCTTCCTTAACAAAGATAAACcaccaacatcatcatcatcatcattatccaCAATAGCTCAAACTCCGTTTGCTCCTTCGCTACATGAAGGTTCAagttcaacatcaacaacatgCCAGAACACAAATCAACCAGAGTCGGTTCATGACGAACATAGCATGCAAGCTATCAATGCTTCAAAAACCGGGGGAAGCAATTCCCAACCGGTTTTAGGAGAAATGGCTGGTTGGTTGGAGGCAATTCCAGCAGGTTGGGGTCCAGGTAGTCCTATATGGGACGATTTGGACCCCAACGGTAATCTTCTTTTGCAGTCACAGTTTCCTTTTTTGAATCCAAATCAGTAA 954 0.3763 MKSEKSTKDEITKVINEIETKQCEMEKGKEKMFVEDVSMQQSPLKKICIPQHQDTNQSSSHQPPSSKIVFPFAFEGSQFPISFPHKSKTTNFLPPFSPPFEPQQNMGYQLSPFSASNSVLPRQRQQIQNKQLLRPQTRPLNGTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDNAENAAMAYDREAFKLRGENAKLNFPELFLNKDKPPTSSSSSLSTIAQTPFAPSLHEGSSSTSTTCQNTNQPESVHDEHSMQAINASKTGGSNSQPVLGEMAGWLEAIPAGWGPGSPIWDDLDPNGNLLLQSQFPFLNPNQ 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g02150 317 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF053 23 317 - -
Tsu03g02150 317 MobiDBLite consensus disorder prediction 210 255 - -
Tsu03g02150 317 ProSiteProfiles AP2/ERF domain profile. 145 202 IPR001471 GO:0003700|GO:0006355
Tsu03g02150 317 Pfam AP2 domain 146 194 IPR001471 GO:0003700|GO:0006355
Tsu03g02150 317 Gene3D AP2/ERF domain 145 203 IPR036955 GO:0003700|GO:0006355
Tsu03g02150 317 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 23 317 - -
Tsu03g02150 317 PRINTS Ethylene responsive element binding protein signature 168 184 IPR001471 GO:0003700|GO:0006355
Tsu03g02150 317 PRINTS Ethylene responsive element binding protein signature 146 157 IPR001471 GO:0003700|GO:0006355
Tsu03g02150 317 SMART rav1_2 145 208 IPR001471 GO:0003700|GO:0006355
Tsu03g02150 317 CDD AP2 144 204 IPR001471 GO:0003700|GO:0006355
Tsu03g02150 317 SUPERFAMILY DNA-binding domain 145 203 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g02150 Tsu-Chr3 22923876 22924829 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g02150 132 297 AP2-EREBP Transcription Factor Family AT2G20880 54.819 1.59e-51 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tsu03g02150 AP2 1.7e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g02150 - - cam:101497734 324.324