Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g02145 ATGTTGCCTAAGGCATTATTGGCCAAGTTCATTCCGAAGCCCTCCACTTTTTCTCATTTCCAATTCAATCAACAGAGAGGATTGCATAGCAGGAACAAGAAAGCCATGGAGTTCATTGCCAAAGGCTGGAATGCTTTGAAGGAGGTTGATAGAGTCATTGATTATTGTGAGCTCAATGATAGGCGTCTCATCCCTCTTCTTAACACAGCAAAGGAGAGTTTTGAGCTTGCTTTGGAGGCTGACAACACCAATACTCATGCTAGGTATTGGTTGGCCAGATTGCATATGAAATACCATGTTCCTGGACAAAATAAGGCTGTAGCGGCAGCATTATTGGTAGAAGCAGCAGATATGGGTGATCCTGATGCACAATATGCATTGGGTTGTCATTTAAGAGTACAGAATGATGATGTCCAGTCAGATCAACAAGCATTTTATTATTTGGAGAAAGCTGTGGACCAGTTGCATCCAGATGCTCTTTACCTTTTGGGTACTGTATATTTGACTGGCGACTGTGTTAAGAAAGATCTTGCTTCAGCATTGTGGTGTTTCCATAGGGCATCAGAGAAGGGCCATGCTGGGGCAGCTATTGCATGTGGATCTCTTCTTCTTAAAGGTGTCAAAATTCCAGaatcaataataaaattcaGTTTGAAGAGAGGTTTGCCTGCTAAAAAACGAGGAAAGAACAAAGAAAGTATTGCAGTTGATCCCATTGAGAtggcaaaagaaaaatttaagaTAGCTGCAAAAGCAGGATGTGATCTTGGATTCAAATGGCTTGCAAGGTTAGAGGAGGAAGAGAAACGTTTGGGAACAAAGTGTCCCTTTGGTCTTGCTTTGGCAGTCAATGTTTCACACAAGGCTTGTGGTTATGGAAATCTACACAAGGCTAGCTATGGAAAACACAGTGTTGGATTAAGCACAATTTTGTTCAACAGAGGGAGTACATGTGGTGCTTGTTATGAGATTAGATGTGTTGATCATATTTTGTGGTGTGTGCTTGGAAGTCCTTCTTTGTCACAAGCTGCTTTTGCTGAAATTGCCAAGAGGAAAGCTGATATTATTCCGGTTCAATATAGAAGAGTGAAGTGTGAAAGAAGTGGTGGCTTAAAATTCACAATGAGTAGAAGTTCACATTTCTATCAAGTCCTAATAACTAATGTGGGGCTAGATGGTGAAGTGTTTGCTGTGAAAGTGAAGGGATCTAGAACAGGATGGATACCAATGGCAAGGAATTGGGGAATGAATTGGCATTGCAATGTCAACCTTCAACATCAACCTTTGTCCTTTGAGGTAACCAGCAGCAATGGAAAAACACTTACATCTTACAATGTTGCACCACGAAACTGGCAATTTGGACAGACGTTTCAAGGAAAACAACTTTAG 1389 0.4046 MLPKALLAKFIPKPSTFSHFQFNQQRGLHSRNKKAMEFIAKGWNALKEVDRVIDYCELNDRRLIPLLNTAKESFELALEADNTNTHARYWLARLHMKYHVPGQNKAVAAALLVEAADMGDPDAQYALGCHLRVQNDDVQSDQQAFYYLEKAVDQLHPDALYLLGTVYLTGDCVKKDLASALWCFHRASEKGHAGAAIACGSLLLKGVKIPESIIKFSLKRGLPAKKRGKNKESIAVDPIEMAKEKFKIAAKAGCDLGFKWLARLEEEEKRLGTKCPFGLALAVNVSHKACGYGNLHKASYGKHSVGLSTILFNRGSTCGACYEIRCVDHILWCVLGSPSLSQAAFAEIAKRKADIIPVQYRRVKCERSGGLKFTMSRSSHFYQVLITNVGLDGEVFAVKVKGSRTGWIPMARNWGMNWHCNVNLQHQPLSFEVTSSNGKTLTSYNVAPRNWQFGQTFQGKQL 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g02145 462 SMART dpbb_1 304 360 IPR007112 -
Tsu03g02145 462 SUPERFAMILY HCP-like 68 208 - -
Tsu03g02145 462 Gene3D Tetratricopeptide repeat domain 17 274 IPR011990 GO:0005515
Tsu03g02145 462 Pfam Expansin C-terminal domain 372 448 IPR007117 -
Tsu03g02145 462 SUPERFAMILY Barwin-like endoglucanases 287 388 IPR036908 -
Tsu03g02145 462 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 380 459 IPR007117 -
Tsu03g02145 462 SUPERFAMILY PHL pollen allergen 367 459 IPR036749 -
Tsu03g02145 462 Gene3D - 277 366 IPR036908 -
Tsu03g02145 462 Pfam Sel1 repeat 121 154 IPR006597 -
Tsu03g02145 462 Pfam Sel1 repeat 157 192 IPR006597 -
Tsu03g02145 462 PRINTS Expansin/Lol pI family signature 308 326 IPR007118 GO:0005576
Tsu03g02145 462 PRINTS Expansin/Lol pI family signature 286 304 IPR007118 GO:0005576
Tsu03g02145 462 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 287 370 IPR007112 -
Tsu03g02145 462 PANTHER OS02G0202600 PROTEIN 14 272 - -
Tsu03g02145 462 Gene3D - 370 462 IPR036749 -
Tsu03g02145 462 SMART sel1 121 156 IPR006597 -
Tsu03g02145 462 SMART sel1 157 192 IPR006597 -
Tsu03g02145 462 SMART sel1 85 120 IPR006597 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g02145 Tsu-Chr3 22868939 22875220 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g02145 289 462 Expansin Gene Family AT4G38210 55.610 1.54e-75 235
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g02145 - - lja:Lj0g3v0263569.1 572.392