Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g02137 ATGTCGAAATCGCCTAGTTGGTCACTTGATGGGAGAATGATGACTGCTTTGTCCTTCTTTAAAGAATCAGCTGGTGGAGGAATATTAGCACAAGTTTGGGTACCTATAAAGTATGGTGATGAATTTGTCTTAACCACAAGTAATCAACCTTATTTACTAGACCAAAAGCTTGCAGGTTATCGCGAAGTGACGAGGTCGGTTACATTTTCTGCAGAAATGCGACAAGGTATATCTGTGAAAGCTCTTCAATCAAATCATCCATTCTTCTATACCGATGTGAAAGCTTATGATATTAGTGAATATCCGCTTGTTCATCATGCGCGAAAATATAACTTGAATGCTGCAGTTGCAACTAGGTTAAGGAGTACTTATActaatgatgatgattatgtGTTAGAATTCTTTCTTCCTATCAATATGATAGGGAGTTCAGAACAACAGCTTTTATTAGATAATTTGTCAGATACTATGAGGAGAATTTGTAAGAGTTTGAGGACAGTTTCAGAAGGTGAGTTAAGAGGGATAGAAGGTTCTCGAGATGGTTTTCTGAAGGAAAATATCTCAGGGTTTTTTCCAATGTCTAAGGGGAACTCTCAGATAGCATTTAGCACTGGTGATCCTGATTTATTCCAGATGCCATTGATGGCAGGTTCACATAGTCAGGTAACAAGTGAATCAAGAAAGCAGGCCGAGAAAGGAAGAAATGCAGTGGAGAAGAATGTTAGCTTGAGTGTTCTCCAACAATACTTTTCTGGTAGTCTGAAGGATGCTGCGAAAAAAATTGGGGGTGAGACCCcatcaatatttgtgaaaatttGTCCAACAACTCTGAAGAGAATATGCAGGCAACATGGAATTTCGAGATGGCCATCGCGCAAGATAAATAAAGTGAATCGCTCGTTGAAGAAAATACAAACTGTCCTTGATTCTGTCCAAGGAGTTGAAGGAGTGCTGAAGTTTGACCCTCACACTGGTGGATTTGTTGCAGGAGGATCAATCATGGAGCAAGTTGGTACACATAATAAAAATCTCATGTTCCCTGAGAAAAGCTCTGTTGAGAACTCGGCCATTAAGTTGGAGGATGATGGTGTTCTTATCTCTAATTCATGTGAGGGTGACTTGAAGAAAGATAATAATGTTTCTTCTGTTGACTATATTCAAGATTCAACATCATGGCTTTGGACAAAGACTCGTGAATGTCCTAAACAAAACTCTATAGATTCTGTTCTTGAAAAAGAGGAAGATCAATGTGGTTTGAACAATAGTAGTTTGCATGATATTGCCTCTAATAGTTCATTCTCATCGATAGAACTTGGTTTGGATGAAGGAAAAGGAGTAGATGAACCTAACCATCCGACTTCTTCAAGCATGACAGACTCTTCCAATGCATTTGGATCAATGGTTCGTGGAAGTTCATCAGGCTCTCAAAGCATTGAGAACCATAAGAACTCAAAGATCAAATCAATTTGTGTTGATAGTGAATCGAAATTTGCCGTCAAAGCTACTTTTAGAGGCGATACTATTCGTTTCAAGTTTGATCCATGTTTAGGTTGTTTCCAACTATATGAAGAAGTTGCAACAAGGTTTAAATTGCGGAATGGTTCATTCCAACTCATGTATCTTGACAATGAAGAGGAATGGGTGCTGTTGGTGAATGACTCAGATTTGAAGGAATGTGTACAAGTTTTGAGTGATAGTGGTACACATTGTGTGAAGTTACTTGTTCGCCATATACACATAGTTGATTCTTCTCAGATATGTCTTAGTATATGA 1773 0.3785 MSKSPSWSLDGRMMTALSFFKESAGGGILAQVWVPIKYGDEFVLTTSNQPYLLDQKLAGYREVTRSVTFSAEMRQGISVKALQSNHPFFYTDVKAYDISEYPLVHHARKYNLNAAVATRLRSTYTNDDDYVLEFFLPINMIGSSEQQLLLDNLSDTMRRICKSLRTVSEGELRGIEGSRDGFLKENISGFFPMSKGNSQIAFSTGDPDLFQMPLMAGSHSQVTSESRKQAEKGRNAVEKNVSLSVLQQYFSGSLKDAAKKIGGETPSIFVKICPTTLKRICRQHGISRWPSRKINKVNRSLKKIQTVLDSVQGVEGVLKFDPHTGGFVAGGSIMEQVGTHNKNLMFPEKSSVENSAIKLEDDGVLISNSCEGDLKKDNNVSSVDYIQDSTSWLWTKTRECPKQNSIDSVLEKEEDQCGLNNSSLHDIASNSSFSSIELGLDEGKGVDEPNHPTSSSMTDSSNAFGSMVRGSSSGSQSIENHKNSKIKSICVDSESKFAVKATFRGDTIRFKFDPCLGCFQLYEEVATRFKLRNGSFQLMYLDNEEEWVLLVNDSDLKECVQVLSDSGTHCVKLLVRHIHIVDSSQICLSI 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g02137 590 Pfam PB1 domain 497 577 IPR000270 GO:0005515
Tsu03g02137 590 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 1 74 - -
Tsu03g02137 590 PANTHER PROTEIN NLP8 1 74 IPR045012 GO:0003700
Tsu03g02137 590 PANTHER PROTEIN NLP8 74 584 IPR045012 GO:0003700
Tsu03g02137 590 Gene3D - 492 576 - -
Tsu03g02137 590 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 74 584 - -
Tsu03g02137 590 MobiDBLite consensus disorder prediction 449 479 - -
Tsu03g02137 590 SUPERFAMILY CAD & PB1 domains 492 577 - -
Tsu03g02137 590 ProSiteProfiles RWP-RK domain profile. 220 317 IPR003035 -
Tsu03g02137 590 MobiDBLite consensus disorder prediction 440 479 - -
Tsu03g02137 590 SMART PB1_new 496 578 IPR000270 GO:0005515
Tsu03g02137 590 Pfam RWP-RK domain 240 297 IPR003035 -
Tsu03g02137 590 ProSiteProfiles PB1 domain profile. 496 578 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g02137 Tsu-Chr3 22734462 22736420 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g02137 29 578 NLP Transcription Factor Family AT2G43500 43.163 6.81e-134 412
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Tsu03g02137 PB1 1.1e-15 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g02137 - - gmx:100793770 624.009