Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g02109 ATGACGAAACAGAACAATGTAGTGACACCTAATCTCATCGCTACCGTGGTTTTACCAAGTGCAACAACTATGCCAGAATCTATGGCTATGCTTGGTGGGTTTTTGGGTttttctcataataataataataataaaaataattttattaagagATTAGAAGGTAGTAAAGTTAATGCTTGGATTGATTCAATGAGAGCTTCTTCACCTACTCGTACTGTTAAAAAATCTTCagaaaatcaagaaaaatgTTCTTGGATTCTTTATCATCCTTCAGCTTTGAAATTGTTTGATCAGATTTTGTATAGTGCAAAAGGAAAACAGATTGTGGTTTTTCTTGATTATGATGGTACTCTTTCTCCCATTGTTGCTGATCCAGATAAAGCTTACATGACTagaaagATGAGAGGAACGCTTAAGGATATAGCAAGACATTTTCCAACAGCCATAGTGACAGGAAGGTGTAGAGACAAGGTGATTAACTTTGTAAAATTAGCAGAATTATACTATGCAGCAAGCCATGGTATGGACATCATGGGACCAACTAAAAACCAAACTGCTGCTGAGAAAacTAACAAAGCAGTGTTGTTCCAACCTGCAAGTCAATTCCTACCAATGATTGATGagGTGTACAAAATATtgttagaaaaaacaaaatctgtCTCTGGAGCTAAGGTAGAGAACAACAAATTTTGTTTGTCCGTGCACTTCCGTTGTGTTGACGAAAAGAGTTGGGCTCCATTGGCAGAGAAAGTTAGATTAGTGCTAAATGAATACCCAAAACTTAAGTTAACACAAGGAAGAAAAGTGTTGGAAATTCGTCCCACCATCAAATGGGACAAAGGAAAAGCTCTTGAATTCTTGATGGAATCATTAGGATACGAGAATTCTAATGATGTATTCCCAATCTATATTGGTGATGATCGTACTGATGAGGATGCATTTAAGGTTTTGCGCAGAAGGGAGCAAGGGGTTGGGATTCTTGTTTCTAGTGTTCCAAAAGAAACAGACGCTTCCTACACACTTCAAGATCCATCAGAGGTTGAGAATTTTTTGCGGCGATTGGTGGAGTGGAAAAGATCAAGTAGTATTGTGAACCCCACATGA 1104 0.3569 MTKQNNVVTPNLIATVVLPSATTMPESMAMLGGFLGFSHNNNNNKNNFIKRLEGSKVNAWIDSMRASSPTRTVKKSSENQEKCSWILYHPSALKLFDQILYSAKGKQIVVFLDYDGTLSPIVADPDKAYMTRKMRGTLKDIARHFPTAIVTGRCRDKVINFVKLAELYYAASHGMDIMGPTKNQTAAEKTNKAVLFQPASQFLPMIDEVYKILLEKTKSVSGAKVENNKFCLSVHFRCVDEKSWAPLAEKVRLVLNEYPKLKLTQGRKVLEIRPTIKWDKGKALEFLMESLGYENSNDVFPIYIGDDRTDEDAFKVLRRREQGVGILVSSVPKETDASYTLQDPSEVENFLRRLVEWKRSSSIVNPT 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g02109 367 SUPERFAMILY HAD-like 109 357 IPR036412 -
Tsu03g02109 367 TIGRFAM T6PP: trehalose-phosphatase 106 355 IPR003337 GO:0003824|GO:0005992
Tsu03g02109 367 CDD HAD_TPP 109 349 - -
Tsu03g02109 367 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 12 363 - -
Tsu03g02109 367 Gene3D - 214 365 IPR023214 -
Tsu03g02109 367 Gene3D - 108 213 IPR023214 -
Tsu03g02109 367 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 12 363 IPR044651 GO:0004805|GO:0005992
Tsu03g02109 367 Pfam Trehalose-phosphatase 111 345 IPR003337 GO:0003824|GO:0005992
Tsu03g02109 367 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 110 319 IPR006379 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g02109 Tsu-Chr3 22249370 22251902 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g02109 104 354 Trehalose Biosynthesis Gene Families AT1G70290 26.394 1.69e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g02109 K01087 - gmx:100815979 553.132
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g02529 05 34407033 34409458 Tsu03g02109 03 22249370 22251902 PCT