Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g02106 ATGGCAGCTATGATGGATTTTTACAGTTACACACAGTTTCACAACTCAGATCCATTTAGAGGCGAATTAATGGAAGTTCTTgaaccttttatcaaaagtCCTTCCTCAACTTCAACCTCAACACAAtcaccttcttattcttcttcttcttcctcttcttcttttctaccttctttttcttctcttcctccTCTTTACACTGATGGTTTTTATAGCCAAAACTTCATAGGCTTTACTCaaccatcttcttcttcttctcttcttggTCTTAACCACTTAACCCCATCACAAATCAACCAGATCCAAACTCAAATCCAACAACAAAACTTTACCAtgcaacaacaacagcaacgtCTTAGTAATACTCTGAGTTTTCTCAGTCCAAAACCGATCTCTATGAAGCATGTGGGAAATAATCCTTCAAAACCCACGAAGCTATATAGAGGGGTGAGACAAAGGCACTGGGGAAAATGGGTTGCTGAGATAAGACTACCAAAGAATCGTACTAGGCTTTGGCTTGGTACTTTTGATACAGCTGAAGAAGCTGCTTTAGCTTATGATAAAGCTGCTTATAAACTTCGTGGTGACTTTGCTAGGCTTAATTTCCCAAATCTTAAACACCAAGGTTCTTCTATTGGTGGTGAGTTTGGTGAATTTAAGCCTCTTCCTTCTTCTGTTGATGCTAAACTTCAAGCTATTTGTGAAGGTTTAGCTGAGATGCAGAAACAAGGGAAGACGGAGAAACCTAAGAAAACATCGGCAGCTCGGTCGAAAGCTAAGGCGGCGGCAGCCGCAGCTTCGTCGGAGACAGTGACTGTGGTTGATGATTCTGTTGTTGATTTGAAGAAGGGTTCAGAGGGTTGTTGTAAGGTTGAAGTTTCATCTTCTCCGGTGAGTGAAGGTGGTTCTTGTGAAGGATCTTCTCCACTTTCGGATCTTACTTTTGGTGATGTTGGTGAGCAACAGTGGGAGGGTGATttagataattttaatttgctAAAATACCCCTCTTATGAGATTGATTGGGATTCTCTGTGA 1038 0.3574 MAAMMDFYSYTQFHNSDPFRGELMEVLEPFIKSPSSTSTSTQSPSYSSSSSSSSFLPSFSSLPPLYTDGFYSQNFIGFTQPSSSSSLLGLNHLTPSQINQIQTQIQQQNFTMQQQQQRLSNTLSFLSPKPISMKHVGNNPSKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNLKHQGSSIGGEFGEFKPLPSSVDAKLQAICEGLAEMQKQGKTEKPKKTSAARSKAKAAAAAASSETVTVVDDSVVDLKKGSEGCCKVEVSSSPVSEGGSCEGSSPLSDLTFGDVGEQQWEGDLDNFNLLKYPSYEIDWDSL 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g02106 345 Pfam AP2 domain 147 195 IPR001471 GO:0003700|GO:0006355
Tsu03g02106 345 MobiDBLite consensus disorder prediction 33 56 - -
Tsu03g02106 345 ProSiteProfiles AP2/ERF domain profile. 146 203 IPR001471 GO:0003700|GO:0006355
Tsu03g02106 345 Coils Coil 98 118 - -
Tsu03g02106 345 SUPERFAMILY DNA-binding domain 146 203 IPR016177 GO:0003677
Tsu03g02106 345 CDD AP2 145 205 IPR001471 GO:0003700|GO:0006355
Tsu03g02106 345 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 4 344 - -
Tsu03g02106 345 SMART rav1_2 146 209 IPR001471 GO:0003700|GO:0006355
Tsu03g02106 345 PRINTS Ethylene responsive element binding protein signature 169 185 IPR001471 GO:0003700|GO:0006355
Tsu03g02106 345 PRINTS Ethylene responsive element binding protein signature 147 158 IPR001471 GO:0003700|GO:0006355
Tsu03g02106 345 Gene3D AP2/ERF domain 146 204 IPR036955 GO:0003700|GO:0006355
Tsu03g02106 345 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-4 4 344 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g02106 Tsu-Chr3 22216930 22219804 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g02106 1 345 AP2-EREBP Transcription Factor Family AT1G78080 52.893 1.24e-97 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tsu03g02106 AP2 7.8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g02106 K09286 - gmx:100800478 355.525
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g02106 03 22216930 22219804 Tsu03g02106 03 22216930 22219804 ECH
Tsu05g02531 05 34444082 34446728 Tsu03g02106 03 22216930 22219804 PCT