Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g02075 ATGATGTCGTCgtggaataataataattcttcTCCGTGTGCAGCGTGCAAGATTCAGCGAAGAAAATGCACAAAAGAATGCATTTTTGCACCATATTTTCCGCCAGATAATCCTCAAAAATTTGCTTATGTACACAAAGTATTTGGTGCTAGTAACGTTTCAAAGTTACTTAATGAGGTGAATATTTCACAACGTGAAGATGCTGTTAAGTCATTAGCTTATGAAGCAGAAGCGCGTTTGAGAGACCCTGTTTATGGTTGTGTTGGTCTTATTTCACATCTTCAGAGTGAACTTAGAAACTTGCAAAATGAACTTGTTATGGCGAAGAAAGAACTAGCTTCTCTTATTGGGCCTAATGGTATAGTTCATCAACCACCACAACCGCCGTTGCTTCCGGCTGCGGCGACCGGAAGTTCTTATTTTTCCTTCGGTTCTTCTGCTCAACAGAAACATGAGATTTTCAACATAAacgGCTTGAGAATGATTTGGCTCCCTAATATTCGTCTCATAAGGTATCAGTTGAAAGATAACTTGAGGCGTACACAACGGATTATAAAGGCACAAGCTGATAAACATAGAAGAGATGTTCACTTTGAGCTGAAGCAATGTAAAGGACAAACTACTGATCCATATCTTCCTTTACCTCTAACTACACATGAAATGGGACCTATTTTGCAGTCCACATTAGTACTTCAAGAGCGGGAGATCATGAGAAATGAACAAGTCATTCCACAAATAAAGATACAATGGGAAGGCTTGAGTGACAAGATTGATTTTAAAAGGGAATGTATTGTAATGAAAAAGACACGTCAGCAGAAAGGACAGTTGGCAAAGGTTCTAGAAAATGCAGAAACGACAAATTCTGTTAGTGATCCACAAATAAAGGGAATGAGGAAGGGGGCAAGATATCGCACTCCATCACACAAGCTGCGTGATTTCTACACTTGA 948 0.3861 MMSSWNNNNSSPCAACKIQRRKCTKECIFAPYFPPDNPQKFAYVHKVFGASNVSKLLNEVNISQREDAVKSLAYEAEARLRDPVYGCVGLISHLQSELRNLQNELVMAKKELASLIGPNGIVHQPPQPPLLPAAATGSSYFSFGSSAQQKHEIFNINGLRMIWLPNIRLIRYQLKDNLRRTQRIIKAQADKHRRDVHFELKQCKGQTTDPYLPLPLTTHEMGPILQSTLVLQEREIMRNEQVIPQIKIQWEGLSDKIDFKRECIVMKKTRQQKGQLAKVLENAETTNSVSDPQIKGMRKGARYRTPSHKLRDFYT 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g02075 315 Coils Coil 91 111 - -
Tsu03g02075 315 Coils Coil 266 286 - -
Tsu03g02075 315 Pfam Lateral organ boundaries (LOB) domain 12 109 IPR004883 -
Tsu03g02075 315 PANTHER LOB DOMAIN-CONTAINING PROTEIN 32-RELATED 9 245 - -
Tsu03g02075 315 ProSiteProfiles LOB domain profile. 11 112 IPR004883 -
Tsu03g02075 315 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 9 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g02075 Tsu-Chr3 21848203 21851673 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g02075 8 128 AS2 family AT5G66870 66.667 4.09e-55 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Tsu03g02075 LOB 6.2e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g02075 - - gmx:100812543 205.297