Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g02046 ATGAACCGCCAAGTGTTACCACCATTACCGAAAAATGCAAGTTCACTTGACCCTAAAATCTGGCGAGCAATCGCCGGCGGCGCCGTTCAAATCCCCGCCGTGAATTCTAGGGTTTATTACTTCCCTCAAGGTCACATGGACCAAGCTTCTTCACTTCCTAACAATCTTTCACCTCAACTACTTTCACGTCCTTACATTCTCTGTACCGTTTCCGGTGTTCATTTCCTCGCCGATCCGAAAACCGATGAGGTTTTCGCTAAGCTTTTTCTTCAACCTTTGAATGATTTCACCGCTGTTTTTCCTCGTGCTGTTATTCATGAAGTTGATGATGGAGAGAGGATTTCTTCGTTTGCGAAGATTCTTACTCCTTCTGATGCTAACAACGGCGGTGGATTTTCCGTTCCAAGGTTTTGTGCTGATTCGATTTTCCCTCCGCTTGATTATACTATGGACCCTCCGTTTCAGTCTCTTTCGATCACTGATGTTCATGGCTTGACTTGGGAGTTTCGTCACATTTACCGTGGTACGCCGCGGCGACATCTGTTGACCACCGGTTGGAGTAGGTTCGTTAACGGTAAGAAGCTAGTTGCCGGTGATTCtgttgtttttatgaagaacAATAGAGGTGCAATGTTCGTCGGGATCCGTCGTGCTGTTCGATTTGTTCCGGCGAATCGAAGTTGCGTCGGTTCGGAAGCTGCGACGAGATTGTGTCTTCCGATCTGTGGGGTGAGAAATAGGGTGGATGATGAAGAGGATGAGAAGCTGGTGGAAGAGAAGTGTAGAGAGGGGTTTTCGAGGAATGGGAAAGGGAAGATGTCGCCGAATTCGGTTGCGATGGCAGCGGAATTGGCGGCACAGGGGATGGCGTTTGAAGTTGTTTATTATCCGAAAGCCGGTTGGTCGgattttgttttgaaagctGAAGTGGTGGATGCTGCTATGAGTATTACTTGGTGTCCTGGAATGAGAATCAAAATGGCTGTGGAGACTGATGATTCTTCCAGGACTACTTGGTTTCAGGGTTCAGTATCTTCAGTCAATGTTCCTGAGCATGGAGCTTGGCGAGGTTCCCCTTGGCGTATGCTTCAGATTACATGGGACGAACCTGAAGTGTTGCAAACTTCCAAGTGGGTCAGCCCTTGGCAGGTCGAACTTCTTTCTACCACACCTTCACTTCATACACCATTTCCCTCAATGAAAAGGATTAGAGTGGGTTCTGGGGTGTTAACTGATGGAGATGGAGACCCCTTTTCTATCACCGGATTCAATAATTCAACAATGGGACAATTGAGTCAAGCGTTGTTGAATTATGGAACTTTTCCTGCTGGCATGCAGGGAGCCAGGCATGATCTATTTTCTGTTTCAAGTTTTTCCAACTTTCCAGGTGATAACTCCCGTCTGTGTATGGGTAACACCTTTAGCAACAACTCGGTGCCAGGGTTGAAATCTTTGTCAACTGAGCTAAATGTTGGCAGTTCTCAATCTGGTGATTTTTCACCAGAGAGCCAGAGTAGTTTGCGTTCCTTTGGCACAGATTTTGTTAGGAACCTCAACTGCAACTCAACGAAACCCGGACCTGTATCGTTTCAGCTATTTGGTGCAGTCATTCAGACCGAACAGCCTGTTGAAAGTGGTTCACATGGTACTGGTAGCTCAGGAGATGATAGCAGTAAGGGCTGCAATGACACTGAAGGCATTAACAATGCTCTTGAGGATTCTTTGACTTACTCGAAATTGCTTGACAGGCTTGATGGCCAGTGCCAAGTTGCCTCAACTGTTGAGGCATGCTATCTGTGA 1800 0.4617 MNRQVLPPLPKNASSLDPKIWRAIAGGAVQIPAVNSRVYYFPQGHMDQASSLPNNLSPQLLSRPYILCTVSGVHFLADPKTDEVFAKLFLQPLNDFTAVFPRAVIHEVDDGERISSFAKILTPSDANNGGGFSVPRFCADSIFPPLDYTMDPPFQSLSITDVHGLTWEFRHIYRGTPRRHLLTTGWSRFVNGKKLVAGDSVVFMKNNRGAMFVGIRRAVRFVPANRSCVGSEAATRLCLPICGVRNRVDDEEDEKLVEEKCREGFSRNGKGKMSPNSVAMAAELAAQGMAFEVVYYPKAGWSDFVLKAEVVDAAMSITWCPGMRIKMAVETDDSSRTTWFQGSVSSVNVPEHGAWRGSPWRMLQITWDEPEVLQTSKWVSPWQVELLSTTPSLHTPFPSMKRIRVGSGVLTDGDGDPFSITGFNNSTMGQLSQALLNYGTFPAGMQGARHDLFSVSSFSNFPGDNSRLCMGNTFSNNSVPGLKSLSTELNVGSSQSGDFSPESQSSLRSFGTDFVRNLNCNSTKPGPVSFQLFGAVIQTEQPVESGSHGTGSSGDDSSKGCNDTEGINNALEDSLTYSKLLDRLDGQCQVASTVEACYL 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g02046 599 Pfam B3 DNA binding domain 117 218 IPR003340 GO:0003677
Tsu03g02046 599 Gene3D - 114 219 IPR015300 -
Tsu03g02046 599 ProSiteProfiles B3 DNA-binding domain profile. 117 219 IPR003340 GO:0003677
Tsu03g02046 599 SMART B3_2 117 219 IPR003340 GO:0003677
Tsu03g02046 599 MobiDBLite consensus disorder prediction 541 565 - -
Tsu03g02046 599 PANTHER AUXIN RESPONSE FACTOR 12 598 - -
Tsu03g02046 599 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 12 598 IPR044835 GO:0003677|GO:0006355|GO:0009725
Tsu03g02046 599 SUPERFAMILY DNA-binding pseudobarrel domain 113 223 IPR015300 -
Tsu03g02046 599 CDD B3_DNA 116 217 IPR003340 GO:0003677
Tsu03g02046 599 Gene3D - 319 392 - -
Tsu03g02046 599 Pfam Auxin response factor 281 364 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g02046 Tsu-Chr3 21458331 21462902 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g02046 12 565 B3 DNA Binding Superfamily AT1G77850 48.155 6.36e-168 489
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Tsu03g02046 B3 8.5e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g02046 - - qsu:112025063 694.115
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g02046 03 21458331 21462902 Tsu03g02046 03 21458331 21462902 ECH