Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tsu03g02035 | ATGCTTTCTTTCCTCTGCACCTTGTTATTGCCGCCGATGACCGGAGAACTATGTTACCGCCGGAAGAATACGACGGAAGGAGGTTCTGCCGCCGTTATAGAAGAGATGCCCTCTCCGGCTGAAACTCCGGCGGAAATTCCGGCCGCGTTGGAGATTGATTACTTCTCGCAGGCTAGGAAAGCGCTTAGCGAACGTTGTCCTTTTGATGTTGCTGAAGAAACGTCGACTTCTGCTGCAGTTACTCTGCCGAGTGGGTTAGCTAGTTTGTTGAACCGTCATGGTGATAACCGGAAGCGTCACAAGAAGTCTCATTCCGGTGGCGgtgataaaaagaagaagaaatcttcTAGGGCTAGCGAGAAGTTGCGTAGTTTTAATGTTTGGGTTGAGACTGAGGAGTATTTTAGGGACTTGAATTTGTCTGATATTGATACTTTATTGGAAGCTTATTCGTCTCATAGTTTAGCTTCTCGTGAGTGTTTTACAATTCCGCAATTTGGAAATGCTACTAGGTTCAATGCAGTTAGTAGTGAGGATGAGAAGAAGCAGGCTCCTATATTCAATGTAGTTAGTAGtgagaatgagaatgagaaGAATGCTGTTGAAGAGGTAAACAACGAGAATGGTTCCTTGGGAATTGAGTTAAGTGATGTTGTTGAATTGGAAAAAGCTTTGCCACTTGATGATGATAAGAATTGTGATGCTTCTGATGATCCCGATGTTAGTTTAGAGTGGTTTTTAGGTAGTaagaatagaatttttttagctTCTGAGCGTCCGTCCAAGAAAAGGAAGCTTTTAGGTGGTGATGCTGGGTTGGAGAAAGTTGTAATGACTAGTCCTTGTGAAGGGGACCAACCttattgtcattattgtggCAGTGCAGATTCTGGCACTGATTCCAATCGGTTAATAGTCTGCTCTTCTTGTAAAGTCGCAGTTCATCGGAAGTGCTATGGTATACAAGACAATGTAGACGAGTCTTGGTTGTGTTCTTGGTGTAAGGAAAAGGGCGATGTTGATGACTCGGTGCCTCCTTGTGTTCTTTGCTCAAAGAAGGGTGGTGCTTTAAAACCAGTTAATAGTGCTGTTGAAGATGCTGGGTCTGCCCAGTTTGTGCACCTGTTTTGTTGTCTGTGGATGCCAGAGGTTTATATTGATGATTTGAAGAAGATGGAGCCTATTATGAATGTGGAAGGCATCAAGGAAACCAGAAGAAAATTGGTGTGTAATGTTTGCAAATTGAAATGTGGTGCTTGTGTTCGGTGTACTCATGGATCCTGCAGAACTCCTTTCCATCCTTTATGTGCAAGGGAAGCTAAACATAGAATGGAAGTTTGGGCAAAGTATGGTATTGAAGATATTGAATTGCGGGCTTTTTGCTCGAAACACTCTGATCTACAAGAGAACAGAAACATCTTGCCATTAGGAGGAGGCTCTATTGCAGTTGGCGGTGAAATTCCAGAAGCTAATAATCATTCAGTGACTTTGCCGGTGAAAAGTGAACACAATTTAAAAATTGGTTGCAGCAATGGAGTGTTGGAGTCTGATAGTAATCCAGGCAAGTTGAACCATAATGATGAGACTCCGTCTGTCTGCACGATTAGTGCTCAAAATATGTTAGGATGTGGCGCTGCGCCACCACATAATATTGGGGTGGCAGGGAGAACCAGTGAGAATGTTAATGCCTCTGAATCCCCCAGTTTTGTACTTATTTTGAGAAAGTTGATAGATAAAGGGAAAGTTGATGTAAAAGATGTAGCATTGGAGATTGGCATTTCACCAGATACATTAACTGCAAATATCAATGAAGCTTATATGGCCCCTGACGTGCAACACAAAATATTCAATTGGCTAAAAGCCCATGTGTATACTGGTGCATCCCATAAAGGCTTAAAAGCCAAATTCAAACCGGCCAATGTATCTATAAATGAAACTGGAGCTTCAGACGGTTCTGATACTTCACTGTTATCTGATTCAGGCTTGCTGGATCCTGTTGCTGTTAATGTCAAGTCTGTACCACCAAGGAGACGAACTATCAATAACATTAGGATTTTGAAGGATAATAAAGTTATATGTTCATCTGAGGGGGTTACCACTAGTGAGAATGGGGTGTCAATCGATAAGATCCTAGTTTGTCAGCCTGAGTGTGAAAGTCCAGGACGTGACAAAGCATCAATTCCTGATGCCACTGTAACGAATTTAACCAAGTCTGAGGATATATTTCATGAGGTTCAAGGCAATGCTGATGAGCCCTACAAATCCAGCTTATCTGTATGCATTTCTGAACAGAAGTCTACTGCTTGTTTGCCGAATGCTTCTATGCTTTCAGATCAGCACTATCCAGCTCATTCTGCTTCAGAACCACTCGTTCCTGGTTTCATAAAAATGGAAGCAATCTCTAGATACATTCACCCTTACATTAACAAGAAATTGCTGCAGATTCGTGATGGCTTGCCCTCAGAAAATCTTATGGGTTTAAGTGGCTACAAAAATTGTTTGATTGAATCCTCTGGAGCTAATAGCTGCTCAAGTAGTGAAAACCAGCAATTAATTTGCACTGATGTTTCCAAGGCTGATCAAGTAAAGATGGAGCAGTTGGATAGGGATGAGTTGGAGGGGGAACTTATATATTTTCAGAATAGATTGCTGCAGAAAGCAGTTGCAAAAAACAGGCTTACTGAAAACTTGGTCTACAATGTTGCCAAGATTTTGCCTCAGGAGATTGATAAAACACATCAACAAAGATGGGATGCTGTGATTGCTAATCAATATCTGTGTGATCTTAGGGAGGCAAAAAAACagggtagaaaagaaaaaaagcacAAGGAAGCACAGGCAGTGTTGGCTGCTGCAACTGCAGCAGCAGCATCATCTTCTAGGGTTTCTTCTTTCCGTAAAGACACCATAGATGAATCTTTGCAACAGAATTCATTGAAGTTGGATGCTTTAAGTGGGCGAACTGGTGCATGTTCTCAGCCAATGCCACGTGCCAAAGAGACTCTTTCTAGAGTTGCTGTCACTAGAGCTTCAACAGAGAAAAATTCGGATTTTTCTCTGCCGCCAAGCTCAGATTTTTCTAAGGGGCAACGTAAATCATGTGATATCTGCAGACGCTTTGAGAATATGTTAAATCCTATCCTAGTCTGCTCTGGTTGCAAGGTTGCAGTGCACTCAGTTTGCTATCGCAGTGTGAAGGAAACAACAGGTCCATGGTACTGTGAATTATGTGAAGATCTATTGTCCAGAAGTTCTGGTACAACTGATATAAATAGCTGGGAGAAGCCTTATTTTGTTGCAGAATGTGCTCTCTGTAATGGTACTACTGGTGCTTTTAGGAAGTCATCTGATGGTCAATGGGTTCATGCCTTCTGTGCTGagTGGCATTTTGAGTCTACATTCAGAAGAGGACAGACAGATGTTATTGAAGGAATGGAGACTGTGCCAAAAGGAGTTGATATTTGTTGCATCTGCCACCGCAGGCAGGGTGTATGTATGAAGTGTTGCTATGGCCATTGCCTGACCACATTTCATCCATCCTGTGCTAGAAGTGCTGGTATGTTCATGATTGTGAGGACTGCTGCTGGGGGAAAGATGCAACACAAGGCTTACTGTGAAAAGCATAGTTCGGAGCAGAGAGCGaaggttttattttttggcTCTTGTTGTAAATGTTCTCTTTTGTTGACCGACCATAATGACATCTTAAGTTTTTATTTCTCATTTTCCCAGGCTGAAAATCAAAAGCATGGAGTTGAAGAGTTAAAAAGTATCAAGCAAATTAGGGTTGAGCTTGAGAGATTACGCCTCCTTTGTGAAAGAATTGTCAAACGGGAAAAGATAAAGCGGGAATTGGTTCTATGCTCACATGACATACTAGCATTTAAGAGAGATCATGTTGCTAGGTCTGTGCTTGTTCATAGTCCTTTTGTCCTTCCAGATGGTAGCTCAGAATCAGCTACAACATCCCTTAAAGCAACCACAGAGGGGTACAGATCGTGCAGTGAAGCTCTCCAAAGATCAGACGATGTAACTGTGGATAGCTCAGTTTCTGCTAAAAACCGTGTCAGAGTTGCCGTATCCATGGACACAGACCCAAAGTTGGATGATGACTGCTCTACCTCACAAAGTCACTATAACCACAAGATTCCAGAGAAGCAATTTTCTGGCAAACAGATTCCTCGTAGAGCTTCTGCTACATCACGCAATATCTCAGAGGAGGATGGATGGAGATCCAAATCTCGAAAGTTACAGGCTACTGAAACATTTGGAAAAGAGCTTGTTATGACATCAGATGAAGCATCTatgaagaattcaaggctacCTAAAGGATATGCATATGTTCCCGCGGATTGCCTGTCAAATGACAAACAGTCTAACGAGGATATATATGCTAGTGGACCAGGGGAACATGACAGGTAG | 4422 | 0.412 | MLSFLCTLLLPPMTGELCYRRKNTTEGGSAAVIEEMPSPAETPAEIPAALEIDYFSQARKALSERCPFDVAEETSTSAAVTLPSGLASLLNRHGDNRKRHKKSHSGGGDKKKKKSSRASEKLRSFNVWVETEEYFRDLNLSDIDTLLEAYSSHSLASRECFTIPQFGNATRFNAVSSEDEKKQAPIFNVVSSENENEKNAVEEVNNENGSLGIELSDVVELEKALPLDDDKNCDASDDPDVSLEWFLGSKNRIFLASERPSKKRKLLGGDAGLEKVVMTSPCEGDQPYCHYCGSADSGTDSNRLIVCSSCKVAVHRKCYGIQDNVDESWLCSWCKEKGDVDDSVPPCVLCSKKGGALKPVNSAVEDAGSAQFVHLFCCLWMPEVYIDDLKKMEPIMNVEGIKETRRKLVCNVCKLKCGACVRCTHGSCRTPFHPLCAREAKHRMEVWAKYGIEDIELRAFCSKHSDLQENRNILPLGGGSIAVGGEIPEANNHSVTLPVKSEHNLKIGCSNGVLESDSNPGKLNHNDETPSVCTISAQNMLGCGAAPPHNIGVAGRTSENVNASESPSFVLILRKLIDKGKVDVKDVALEIGISPDTLTANINEAYMAPDVQHKIFNWLKAHVYTGASHKGLKAKFKPANVSINETGASDGSDTSLLSDSGLLDPVAVNVKSVPPRRRTINNIRILKDNKVICSSEGVTTSENGVSIDKILVCQPECESPGRDKASIPDATVTNLTKSEDIFHEVQGNADEPYKSSLSVCISEQKSTACLPNASMLSDQHYPAHSASEPLVPGFIKMEAISRYIHPYINKKLLQIRDGLPSENLMGLSGYKNCLIESSGANSCSSSENQQLICTDVSKADQVKMEQLDRDELEGELIYFQNRLLQKAVAKNRLTENLVYNVAKILPQEIDKTHQQRWDAVIANQYLCDLREAKKQGRKEKKHKEAQAVLAAATAAAASSSRVSSFRKDTIDESLQQNSLKLDALSGRTGACSQPMPRAKETLSRVAVTRASTEKNSDFSLPPSSDFSKGQRKSCDICRRFENMLNPILVCSGCKVAVHSVCYRSVKETTGPWYCELCEDLLSRSSGTTDINSWEKPYFVAECALCNGTTGAFRKSSDGQWVHAFCAEWHFESTFRRGQTDVIEGMETVPKGVDICCICHRRQGVCMKCCYGHCLTTFHPSCARSAGMFMIVRTAAGGKMQHKAYCEKHSSEQRAKVLFFGSCCKCSLLLTDHNDILSFYFSFSQAENQKHGVEELKSIKQIRVELERLRLLCERIVKREKIKRELVLCSHDILAFKRDHVARSVLVHSPFVLPDGSSESATTSLKATTEGYRSCSEALQRSDDVTVDSSVSAKNRVRVAVSMDTDPKLDDDCSTSQSHYNHKIPEKQFSGKQIPRRASATSRNISEEDGWRSKSRKLQATETFGKELVMTSDEASMKNSRLPKGYAYVPADCLSNDKQSNEDIYASGPGEHDR | 1473 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tsu03g02035 | 1473 | MobiDBLite | consensus disorder prediction | 94 | 111 | - | - | |
| Tsu03g02035 | 1473 | PANTHER | PHD FINGER PROTEINS | 1244 | 1469 | - | - | |
| Tsu03g02035 | 1473 | ProSiteProfiles | Extended PHD (ePHD) domain profile. | 344 | 465 | IPR034732 | - | |
| Tsu03g02035 | 1473 | PANTHER | PHD FINGER PROTEINS | 235 | 470 | - | - | |
| Tsu03g02035 | 1473 | PANTHER | PHD-FINGER DOMAIN CONTAINING PROTEIN FAMILY-RELATED | 825 | 1213 | - | - | |
| Tsu03g02035 | 1473 | SUPERFAMILY | FYVE/PHD zinc finger | 279 | 336 | IPR011011 | - | |
| Tsu03g02035 | 1473 | MobiDBLite | consensus disorder prediction | 1361 | 1417 | - | - | |
| Tsu03g02035 | 1473 | CDD | ePHD | 1102 | 1208 | - | - | |
| Tsu03g02035 | 1473 | MobiDBLite | consensus disorder prediction | 1451 | 1473 | - | - | |
| Tsu03g02035 | 1473 | MobiDBLite | consensus disorder prediction | 90 | 118 | - | - | |
| Tsu03g02035 | 1473 | Pfam | PHD-finger | 302 | 335 | - | - | |
| Tsu03g02035 | 1473 | Pfam | PHD-finger | 1045 | 1078 | - | - | |
| Tsu03g02035 | 1473 | ProSiteProfiles | Extended PHD (ePHD) domain profile. | 1099 | 1209 | IPR034732 | - | |
| Tsu03g02035 | 1473 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 1009 | 1085 | IPR013083 | - | |
| Tsu03g02035 | 1473 | ProSiteProfiles | Zinc finger PHD-type profile. | 1031 | 1080 | IPR019787 | - | |
| Tsu03g02035 | 1473 | MobiDBLite | consensus disorder prediction | 1361 | 1376 | - | - | |
| Tsu03g02035 | 1473 | ProSitePatterns | Zinc finger PHD-type signature. | 289 | 334 | IPR019786 | - | |
| Tsu03g02035 | 1473 | ProSitePatterns | Zinc finger PHD-type signature. | 1034 | 1077 | IPR019786 | - | |
| Tsu03g02035 | 1473 | Pfam | PHD-zinc-finger like domain | 346 | 464 | - | - | |
| Tsu03g02035 | 1473 | Pfam | PHD-zinc-finger like domain | 1101 | 1208 | - | - | |
| Tsu03g02035 | 1473 | PANTHER | PHD FINGER PROTEINS | 825 | 1213 | - | - | |
| Tsu03g02035 | 1473 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 277 | 341 | IPR013083 | - | |
| Tsu03g02035 | 1473 | Coils | Coil | 187 | 207 | - | - | |
| Tsu03g02035 | 1473 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 342 | 467 | IPR013083 | - | |
| Tsu03g02035 | 1473 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 1099 | 1211 | IPR013083 | - | |
| Tsu03g02035 | 1473 | SUPERFAMILY | FYVE/PHD zinc finger | 1031 | 1078 | IPR011011 | - | |
| Tsu03g02035 | 1473 | ProSiteProfiles | Zinc finger PHD-type profile. | 286 | 337 | IPR019787 | - | |
| Tsu03g02035 | 1473 | SMART | PHD_3 | 1033 | 1078 | IPR001965 | - | |
| Tsu03g02035 | 1473 | SMART | PHD_3 | 288 | 335 | IPR001965 | - | |
| Tsu03g02035 | 1473 | SMART | PHD_3 | 1154 | 1209 | IPR001965 | - | |
| Tsu03g02035 | 1473 | SMART | PHD_3 | 409 | 465 | IPR001965 | - | |
| Tsu03g02035 | 1473 | Coils | Coil | 1258 | 1278 | - | - | |
| Tsu03g02035 | 1473 | PANTHER | PHD-FINGER DOMAIN CONTAINING PROTEIN FAMILY-RELATED | 235 | 470 | - | - | |
| Tsu03g02035 | 1473 | PANTHER | PHD-FINGER DOMAIN CONTAINING PROTEIN FAMILY-RELATED | 1244 | 1469 | - | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Tsu03g02035 | 289 | 472 | C2H2 Transcription Factor Family | AT3G14740 | 29.412 | 1.57e-16 | 81.3 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TR | PHD | Tsu03g02035 | zf-HC5HC2H_2 | 1.3e-22 | CL0390 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tsu03g02035 | - | - | gmx:100775631 | 1858.19 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Tsu03g02035 | 03 | 21166717 | 21178677 | Tsu03g02035 | 03 | 21166717 | 21178677 | ECH |