Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g02020 ATGTCTACTTCGGTTGAAAATCGTCGAACCTACTACACTACCCTTGAATATGGCATCCTTGAACCCTTAAAGCCAATTAGCTCAAAAATCTCTTGTATATCGGATTCTTCAAACAAAGAAGATGACGAGAATTACTTGAACATGATAAAAAACATAATCTTAAAGGGAAGATCGGAAGTAGAACCTTCGGTATTAGACCTTCGCGATGAGGGAACCGCGGATCATTGGATCCAAAGAAACCCTTCCTTGGTCCGTCTTACGGGCAAACATCCTTTCAACTCAGAGCCACCACTCCAAAGCCTCATGCACCATGGCTTCATAACTCCCGTTCAACTCCACTATGTTCGTAATCACGGGCATGTTCCTAAAGCTTGTTGGGAAGATTGGACCATCGAAGTAACGGGTCTAGTCAAAAGTCCGACCCAGTTTACGATGGACCAACTTGTCAATGACTTCCCAAGCCGTGAATTCCCTGTCACGCTTGTTTGTTCTGCAAATCGTCGTAAGGAACAAAATATGGTGAAACAGACTATTGGCTTTAACTGGGGCCCATCTGCCACTTCCACTTCGGTATGGCGCGGTGTACCATTGCGCAACGTGCTCAAGAAGTGTGGAATCTATAGCCGTAACAGTGGAGCCCTCTATGTTTGCTTTGAAGGTGCTGAGGAACTACCAGGTGGTGGTGGCAGTAAATACGGAACTAGTATCTTGTGTGAGGTTGCATTGGATCGCACACGCGATATCATCCTCGCTTATATGCAAAACGGTGATGTTTTATCTCCTGATCACGGTTTTCCGGTGCGGGTTATCGTTCCTGGTTTCACTGCAGGGAGAATGGTGAAATGGTTGAAGCGCATCATTGTAACAACCAAAGAATCGGATAGCTATTACCATTACCACGATAACAGATTACTTCCTTCACAGGTCGATGCTGAGCTTGCAAATACAGAAGCATGGTTCTATAAGCCGGAATATATTATCAACGAGTTGAACATAAACTCTGCAATAACCACGCCAAGCCATGGCGAGATATTGGCCGTCAACTCAGACACTACTCAAATACCTTATTTACTCAAAGGCTACGCATATTCCGGGGGAGGGAGAAAGGTGACAAGAGTTGAGGTAACATTGGACGGTGGTGAAACATGGAAAGTATGCAAAATAGAGCATCcagaaaaaccaaacaaatacgGTAAGTATTGGTGTTGGTGTTTTTGGTCGTTGGAGGTTGAAGTGTTAGACTTGTTTGGAGCTAAAGAAATTGCAGTGCGTGCATGGGACCTGGCTAATAACACTCAGCCTGAGAATCTCAATTGGAATCTTATGGGCATGATGAATAATTGTTGGTTCAGGGTGAAAACAAATGTGTACAAGCCTCACAAGAGAGAAATTGGGTTAATGTTTGAACATCCAACCCAACCAGGAAATCAATCTGGTGGTTGGATggtcaaagaaaaagaagaagttaataaaaaatcatcaatttcaaACCCAACCACTAAGGAAACAAATATTGTCTCCTCATCACTACAAACAAATACTATAATTAGCTCAAAAATGTACACTATATCTGAGGTGAAAAAACATAATAACTCTGATTCTACTTGGATTATCGTTGACGGTCACGTCTACGATTGCACTCACTACCTCAAAGACCACCCTGGAGGTGTCGATAGCATCCTCATCAATGCCGGCACTGATTGTACCGAGGAGTTTGAAGCCATCCACTCCGATAAAGCAAAGAAAATGCTTGAAGATTACTTGATTGGCAAGCTTGACACCAATGGGAATAATGTTGAAAACACCAACAAAGTTATTATCACACCAATGCATAACAATGTGACTTTAAAAAACCCACGTGATAAAATTACATGCAAgcttgtgtcaaaaaaatcaatCTCCCACAATGTTAGGATTTTTCGGTTTGTGTTACCTTATGAAGATCAACTCTTGGGTTTGCCAGTTGGAAAACACTTATTTTTATGTGACACTATTGAAAAGAAGCTATGCATGCGAGCTTTCACTCCAACGAGTGGTGTAGATGAAAAGGGATATTTTGATCTAGTGGTTAAGATTTACTTCAAAGGGGTGCACCCAAAATACCCCAATGGTGGCATAATGTCGCAACATTTAGACTCTTTGTCTATTGGCTCTATTTTGGAAATAAAGGGTCCATTGGGACATATTGAGTATACTGGTAAAGGAAATTTTCTTGTTCATGGAGAACACAAGTTTGCAAAAAGTTTAGCTATGTTGGCCGGTGGAACTGGGATAACGCCGATTTATCAAGTGGTTCAAGCGATTCTGAAAGACCCGGAGGATCTAACTGAAATGTATGTTGTGTATGCTAATAGAAGTGAAGATGATATATTGTTAAGGGAAGAGATGGATGAATGGGCTAAGAAGCGTGAAAGGTTCAAGATATGGTATGTGGTACAAGAAAGTAAAAGAGAAGGGTGGGAGTATAGTGTGGGGTTCATTACTGAAAGTATATTGAAGAAGCATGTTCCAAAAGCATCGGAGAATACACTGGCATTGGCATGTGGACCACCACCTATGATTGAAGGGGTGAAATCCAATTTAGAGAAATTGGGATATGACATCAAGAACAACTTGCTTGTGTTTTAG 2628 0.406 MSTSVENRRTYYTTLEYGILEPLKPISSKISCISDSSNKEDDENYLNMIKNIILKGRSEVEPSVLDLRDEGTADHWIQRNPSLVRLTGKHPFNSEPPLQSLMHHGFITPVQLHYVRNHGHVPKACWEDWTIEVTGLVKSPTQFTMDQLVNDFPSREFPVTLVCSANRRKEQNMVKQTIGFNWGPSATSTSVWRGVPLRNVLKKCGIYSRNSGALYVCFEGAEELPGGGGSKYGTSILCEVALDRTRDIILAYMQNGDVLSPDHGFPVRVIVPGFTAGRMVKWLKRIIVTTKESDSYYHYHDNRLLPSQVDAELANTEAWFYKPEYIINELNINSAITTPSHGEILAVNSDTTQIPYLLKGYAYSGGGRKVTRVEVTLDGGETWKVCKIEHPEKPNKYGKYWCWCFWSLEVEVLDLFGAKEIAVRAWDLANNTQPENLNWNLMGMMNNCWFRVKTNVYKPHKREIGLMFEHPTQPGNQSGGWMVKEKEEVNKKSSISNPTTKETNIVSSSLQTNTIISSKMYTISEVKKHNNSDSTWIIVDGHVYDCTHYLKDHPGGVDSILINAGTDCTEEFEAIHSDKAKKMLEDYLIGKLDTNGNNVENTNKVIITPMHNNVTLKNPRDKITCKLVSKKSISHNVRIFRFVLPYEDQLLGLPVGKHLFLCDTIEKKLCMRAFTPTSGVDEKGYFDLVVKIYFKGVHPKYPNGGIMSQHLDSLSIGSILEIKGPLGHIEYTGKGNFLVHGEHKFAKSLAMLAGGTGITPIYQVVQAILKDPEDLTEMYVVYANRSEDDILLREEMDEWAKKRERFKIWYVVQESKREGWEYSVGFITESILKKHVPKASENTLALACGPPPMIEGVKSNLEKLGYDIKNNLLVF 875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g02020 875 SUPERFAMILY Riboflavin synthase domain-like 614 733 IPR017938 -
Tsu03g02020 875 PANTHER NADH-CYTOCHROME B5 REDUCTASE 45 875 IPR001834 GO:0016491
Tsu03g02020 875 CDD eukary_NR_Moco 69 454 - -
Tsu03g02020 875 SUPERFAMILY Oxidoreductase molybdopterin-binding domain 67 327 IPR036374 -
Tsu03g02020 875 Pfam Mo-co oxidoreductase dimerisation domain 325 455 IPR005066 GO:0016491|GO:0030151
Tsu03g02020 875 Gene3D Translation factors 612 726 - -
Tsu03g02020 875 Gene3D - 66 319 IPR036374 -
Tsu03g02020 875 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 750 769 IPR001709 GO:0016491
Tsu03g02020 875 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 776 785 IPR001709 GO:0016491
Tsu03g02020 875 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 788 799 IPR001709 GO:0016491
Tsu03g02020 875 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 820 836 IPR001709 GO:0016491
Tsu03g02020 875 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 552 562 IPR001709 GO:0016491
Tsu03g02020 875 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 844 852 IPR001709 GO:0016491
Tsu03g02020 875 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 719 870 IPR039261 -
Tsu03g02020 875 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 549 556 IPR018506 GO:0020037
Tsu03g02020 875 PRINTS Eukaryotic molybdopterin domain signature 358 372 IPR008335 GO:0016491
Tsu03g02020 875 PRINTS Eukaryotic molybdopterin domain signature 84 98 IPR008335 GO:0016491
Tsu03g02020 875 PRINTS Eukaryotic molybdopterin domain signature 276 289 IPR008335 GO:0016491
Tsu03g02020 875 PRINTS Eukaryotic molybdopterin domain signature 260 273 IPR008335 GO:0016491
Tsu03g02020 875 PRINTS Eukaryotic molybdopterin domain signature 424 436 IPR008335 GO:0016491
Tsu03g02020 875 PRINTS Eukaryotic molybdopterin domain signature 372 384 IPR008335 GO:0016491
Tsu03g02020 875 PRINTS Eukaryotic molybdopterin domain signature 437 450 IPR008335 GO:0016491
Tsu03g02020 875 PRINTS Eukaryotic molybdopterin domain signature 106 122 IPR008335 GO:0016491
Tsu03g02020 875 PRINTS Eukaryotic molybdopterin domain signature 327 339 IPR008335 GO:0016491
Tsu03g02020 875 PRINTS Eukaryotic molybdopterin domain signature 159 170 IPR008335 GO:0016491
Tsu03g02020 875 PRINTS Eukaryotic molybdopterin domain signature 243 259 IPR008335 GO:0016491
Tsu03g02020 875 PRINTS Eukaryotic molybdopterin domain signature 170 182 IPR008335 GO:0016491
Tsu03g02020 875 PRINTS Eukaryotic molybdopterin domain signature 399 409 IPR008335 GO:0016491
Tsu03g02020 875 PRINTS Eukaryotic molybdopterin domain signature 185 200 IPR008335 GO:0016491
Tsu03g02020 875 Gene3D - 516 603 IPR036400 -
Tsu03g02020 875 Pfam Oxidoreductase molybdopterin binding domain 118 297 IPR000572 -
Tsu03g02020 875 Pfam Cytochrome b5-like Heme/Steroid binding domain 523 592 IPR001199 -
Tsu03g02020 875 SUPERFAMILY E set domains 329 456 IPR014756 -
Tsu03g02020 875 Pfam Oxidoreductase NAD-binding domain 751 858 IPR001433 GO:0016491
Tsu03g02020 875 Gene3D - 727 875 IPR039261 -
Tsu03g02020 875 CDD cyt_b5_reduct_like 625 875 - -
Tsu03g02020 875 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 620 732 IPR017927 GO:0016491
Tsu03g02020 875 Gene3D - 329 506 - -
Tsu03g02020 875 Pfam Oxidoreductase FAD-binding domain 625 731 IPR008333 -
Tsu03g02020 875 PIRSF Nitr_rd_NADH 3 874 IPR012137 GO:0006809|GO:0042128|GO:0050464
Tsu03g02020 875 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 518 593 IPR001199 -
Tsu03g02020 875 PRINTS Cytochrome B5 signature 568 575 IPR001199 -
Tsu03g02020 875 PRINTS Cytochrome B5 signature 553 567 IPR001199 -
Tsu03g02020 875 PRINTS Cytochrome B5 signature 543 553 IPR001199 -
Tsu03g02020 875 PRINTS Cytochrome B5 signature 580 592 IPR001199 -
Tsu03g02020 875 SMART Cyt_b5_2 521 593 IPR001199 -
Tsu03g02020 875 PRINTS Cytochrome B5 reductase signature 717 731 - -
Tsu03g02020 875 PRINTS Cytochrome B5 reductase signature 672 679 - -
Tsu03g02020 875 PRINTS Cytochrome B5 reductase signature 844 852 - -
Tsu03g02020 875 PRINTS Cytochrome B5 reductase signature 750 769 - -
Tsu03g02020 875 PRINTS Cytochrome B5 reductase signature 788 799 - -
Tsu03g02020 875 PRINTS Cytochrome B5 reductase signature 651 662 - -
Tsu03g02020 875 PANTHER NITRATE REDUCTASE 45 875 - -
Tsu03g02020 875 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 518 598 IPR036400 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g02020 Tsu-Chr3 20948269 20952469 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g02020 618 866 NADPH P450 reductases AT5G17770 37.302 1.73e-47 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g02020 K10534 - gmx:732634 1329.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g02020 03 20948269 20952469 Tsu03g02020 03 20948269 20952469 ECH