Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tsu03g02019 | atggtgCAAACGCTTGCAATGCCTGTGGCACATTCACTCTCAATAATCTCCAATCCTCAATTCTCCAATAGAGTTTCCTTCCCAATTCTCAACACTCCAAAACCAAAGGTTCAAAGGTTAAACATTGTGTGTGTTCGTGTTGGTGGTGTGGAAATTCCAAACAATAAGAGAATTGAATTCTCGTTGCAGTACATTCATGGAGTTGGAAGGAACAGAGCTCGACAGATTTTAACTGATATCAAAATGGATAATAAAGTTACAAAGGATTTGAGTGAAGAAGAACTTATTAGTCTTAGGGATGAAGTTTCTAAATACATGACTGAAGGAGATTTGAGAAGGTTTAATGCACTTAATATAAAGAGGTTGAAGGAGATTCAGTGTTACAGAGGAATAAGGCATATTCAAGGACTTCCTTGTAGAGGACAGCGTACGAAGAACAATTGCAGGACATTGAAGGGTAAGAAGGTTACCATTGCtggaaagaagaagaagtaa | 495 | 0.3616 | MVQTLAMPVAHSLSIISNPQFSNRVSFPILNTPKPKVQRLNIVCVRVGGVEIPNNKRIEFSLQYIHGVGRNRARQILTDIKMDNKVTKDLSEEELISLRDEVSKYMTEGDLRRFNALNIKRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVTIAGKKKK | 164 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tsu03g02019 | 164 | PANTHER | 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 | 1 | 163 | - | - | |
Tsu03g02019 | 164 | SUPERFAMILY | S13-like H2TH domain | 45 | 156 | IPR010979 | GO:0003676 | |
Tsu03g02019 | 164 | ProSitePatterns | Ribosomal protein S13 signature. | 129 | 142 | IPR018269 | GO:0003723|GO:0003735|GO:0005840|GO:0006412 | |
Tsu03g02019 | 164 | Gene3D | - | 45 | 113 | - | - | |
Tsu03g02019 | 164 | Gene3D | 30s ribosomal protein s13, domain 2 | 114 | 164 | IPR027437 | - | |
Tsu03g02019 | 164 | Hamap | 30S ribosomal protein S13 [rpsM]. | 44 | 160 | IPR001892 | GO:0003723|GO:0003735|GO:0005840|GO:0006412 | |
Tsu03g02019 | 164 | ProSiteProfiles | Ribosomal protein S13 family profile. | 47 | 153 | IPR001892 | GO:0003723|GO:0003735|GO:0005840|GO:0006412 | |
Tsu03g02019 | 164 | TIGRFAM | uS13_bact: ribosomal protein uS13 | 46 | 155 | IPR019980 | GO:0003723|GO:0003735|GO:0005840|GO:0006412 | |
Tsu03g02019 | 164 | Pfam | Ribosomal protein S13/S18 | 46 | 150 | IPR001892 | GO:0003723|GO:0003735|GO:0005840|GO:0006412 | |
Tsu03g02019 | 164 | PANTHER | 37S RIBOSOMAL PROTEIN SWS2, MITOCHONDRIAL | 1 | 163 | IPR019980 | GO:0003723|GO:0003735|GO:0005840|GO:0006412 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Tsu03g02019 | Tsu-Chr3 | 20936381 | 20938571 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Tsu03g02019 | 45 | 162 | Cytoplasmic Ribosomal Protein Gene Family | AT4G09800 | 30.986 | 1.26e-07 | 47.0 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tsu03g02019 | K02952 | - | gmx:100500355 | 247.669 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Tsu03g02019 | 03 | 20936381 | 20938571 | Tsu03g02019 | 03 | 20936381 | 20938571 | ECH |