Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g02013 ATGGATGGGAAGTCTAACCTTCCGATCAAGCCAGATTCTTCTTCCCCGGACTTCGTCCGCCACGTTCAAGCCGCCTTGAAACGTCACCGTCCTCTCGGTCAATCCAATATCATTAAACCAAGACGCACCATTCTTCTTCAACCTCAAACTACCACCACTGTTGTTAACCCTTCTCAACATGCAAACAAACTTCAACAGGAAATGGAGTATGTTGAAGGCAATGAACCTGAAGATTCAATTGGAATCAACAATGATGATTCGAAGCAACCAAAAATTCAGCAAGTTGAGGCTGATTTTAGTTTCAGATCTGACGGAGGAATGCCGAGGAGAACTACGGTTACGCGGGATAATTTGCAGAAGTTTAGCAACTTTCTAAGTCAGCCAGCGACACAATCTTCAGTCGTGGGACCTTCCTGTGCTACAACTACGTCGGTTCATTCAACTTCAGCTCCCATGATGAATTCAACTACCCGTTTGCATGGAGAAAGTGGCTTGCGCGTGGTTGCTGGTGTTTCTCCTATAGCTGAAAGAGTTATGGAATCAGAAAATACAGATACTTCTGTGGAAAACGACAATAAAATGTTAGTTGATAAGGCTGAAACTTCGGTGCAAGCTTCTGATTCTTGTGTGGATGCTGAGTTAGCATCTAGAGAGAGTGACCAATCAAAGGAGCAACAAGAATGCTTGTTAAAAGAAACCGGCAATTCCAAATATGCTTCTTGTGGTGGTGACAAGATGACCGAAGTGAAAGAGCCTGCAGATGTTGCCAATGTACACCGACTGGTGCCCAAAACATCATCTTTGGATGTGAAGTCTGAATCTTCCAAATTAGAAAAACGAGAGAAGGCTGCGAGTAGTAAAGGTTCGTCAGTCGCTAAGAAAAGGTCCTATGACCCTGACTTATTTTTTAAGGTTAACGGCAAGCTTTATCAACGTCTTGGCAAGATAGGTAGTGGTGGAAGTAGTGAGGTGCACAAGGTGATTTCATCAGATTGTAGGATATATGCGCTTAAGAAGATCAAACTCAGGGGTCGTGATTATGCTACTGCATACGGGTTTTGTCAAGAGATTGAATATCTAAATAGGCTGAGAGGAAAGGATAATATTATACAGCTTATAGATTATGAGGTGACTGACAAGGCTTTGCTTGAAGAAGTTATGAAAGGCTCTCTTAGTAATAAGGATGGCCGAGTCAAAGATGATGGATATATATACATGGTTCTTGAATACGGTGAAATTGATTTAGCTCACATGTTGTCCCAGAAGTGGAAGGAGTTGGATGGATCCAAAGAGACAATAGACGAGAACTGGCTTCGATTTTATTGGCAGCAAATTCTTCAAGCTGTCAATACAATTCACGAGGAACGTATTGTGCACTCTGACTTGAAGCCAGCTAACTTCCTCCTCGTCAAGGGTTCCCTAAAACTGATTGACTTCGGTATCGCCAAAGCAATAATGAGTGATACTACTAATATCCAACGGGAATCACAGGTGGGTACTCTGAGTTACATGTCTCCGGAAGCATTTATGTGCAATGAGACTGATGCAAACGGAAACGTCATCAAGTGCGGTCGGCCGTCAGATATCTGGTCTTTGGGATGCATCCTTTATCAAATGGTATATGGGAGAACCCCTTTTTCCGAATTCAAGACATTCTGGGCCAAATTTAAAGTTATAACAGATCCAAATCATGAAATTACGTATGAACCACTTTCAAATCCATGGCTAGTGGATCTTATGAAGAGGTGTCTAGCATGGGATCGCAATCAAAGGTGGAGAATTCCTCAGTTACTCCAACATCCTTTTCTTGCACCTCACGTACTACCTCACCCATCTTTGTCCCAAGACCATAGCTGTAAATTTGTACAACTTATTGCTGAAACTTGTACATATGACCCTGAAGCATCCCAACTTTGTCATCAGCTCCAACGTCTACTTGTTGATCCACTTGAGTTGACGAATCACTCGCTAAATTCACAAGATCAACAAAGAACACTGCTGTCCAAAATGTCTGAACTCTGTATTCAGCTGCAGGAACGTTTGATGTAA 2049 0.4241 MDGKSNLPIKPDSSSPDFVRHVQAALKRHRPLGQSNIIKPRRTILLQPQTTTTVVNPSQHANKLQQEMEYVEGNEPEDSIGINNDDSKQPKIQQVEADFSFRSDGGMPRRTTVTRDNLQKFSNFLSQPATQSSVVGPSCATTTSVHSTSAPMMNSTTRLHGESGLRVVAGVSPIAERVMESENTDTSVENDNKMLVDKAETSVQASDSCVDAELASRESDQSKEQQECLLKETGNSKYASCGGDKMTEVKEPADVANVHRLVPKTSSLDVKSESSKLEKREKAASSKGSSVAKKRSYDPDLFFKVNGKLYQRLGKIGSGGSSEVHKVISSDCRIYALKKIKLRGRDYATAYGFCQEIEYLNRLRGKDNIIQLIDYEVTDKALLEEVMKGSLSNKDGRVKDDGYIYMVLEYGEIDLAHMLSQKWKELDGSKETIDENWLRFYWQQILQAVNTIHEERIVHSDLKPANFLLVKGSLKLIDFGIAKAIMSDTTNIQRESQVGTLSYMSPEAFMCNETDANGNVIKCGRPSDIWSLGCILYQMVYGRTPFSEFKTFWAKFKVITDPNHEITYEPLSNPWLVDLMKRCLAWDRNQRWRIPQLLQHPFLAPHVLPHPSLSQDHSCKFVQLIAETCTYDPEASQLCHQLQRLLVDPLELTNHSLNSQDQQRTLLSKMSELCIQLQERLM 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g02013 682 CDD PKc_Mps1 308 603 - -
Tsu03g02013 682 Gene3D Phosphorylase Kinase; domain 1 303 390 - -
Tsu03g02013 682 ProSitePatterns Serine/Threonine protein kinases active-site signature. 457 469 IPR008271 GO:0004672|GO:0006468
Tsu03g02013 682 MobiDBLite consensus disorder prediction 271 291 - -
Tsu03g02013 682 SMART serkin_6 310 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g02013 682 MobiDBLite consensus disorder prediction 267 291 - -
Tsu03g02013 682 ProSiteProfiles Protein kinase domain profile. 310 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g02013 682 SUPERFAMILY Protein kinase-like (PK-like) 304 612 IPR011009 -
Tsu03g02013 682 PANTHER DUAL SPECIFICITY PROTEIN KINASE TTK 61 653 IPR027084 GO:0004712|GO:0007093|GO:0051304
Tsu03g02013 682 PANTHER MIXED LINEAGE PROTEIN KINASE 61 653 - -
Tsu03g02013 682 Pfam Protein kinase domain 310 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g02013 682 ProSitePatterns Protein kinases ATP-binding region signature. 316 338 IPR017441 GO:0005524
Tsu03g02013 682 Gene3D Transferase(Phosphotransferase) domain 1 424 635 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g02013 Tsu-Chr3 20861540 20865458 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g02013 316 603 MAP Kinase Kinase Kinase AT4G08470 28.866 9.52e-24 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TTK Tsu03g02013 Pkinase 2.8e-56 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g02013 K08866 - gmx:100780144 929.472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g02013 03 20861540 20865458 Tsu03g02013 03 20861540 20865458 ECH