Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g02012 atGAGCAAATCCAAAACTCAAAGAATGCCTACTATCACCAATCATCATATAGTAAcccaaaaagaaaaccaaaggCCACAGAAAACTGAGAAACAACCCTCTTGGTCAGTAGTAAGAGGCTTTTTAGCTTGTAGGAGTGTTGAAATCCAACAACAACAGCAGAAGGAAGCAAAACAACAACCACAACCTCAACCTGTACCAGAAGCAAAACAACCAAAGAAAAAACAGCAACAGAGGAAGCTGAAAGAAGAAAGAGTCTCAGAagataacaacaaaaaaagcaaGAAGATGAAATGTTCAGGTTCTCTCTGCAACAACACTGGAATGATGGCAAAGCCagaaacaacaataacaacagcagcagcagcagcaacaagaACAACTACTGATATTCACAAGAAAAAGGTGTCACTTGGTGGATGCAAAAACAACTTGGCTTCTAGTTCTAGTAGATCCATGAAAGCTCCTCTAAATGAACTCAACGGAAGAACCGTGTCCGCCtcgtcttcttcttcactttcaGCAGCATCTTCTAACTCTTCCGGCGCTGGTTCTTTTAAGGGAATGCCATTTAGGAGACTCTCCGGTTGTTACGAGTGTCGAATGGTGGTTGACCCTGTTCTTGGTTTCGCTAGAGACTCTTCTCTAAGAAGCTCCATTTGTACTTGTCCTGATTGTGGTGAGATCATGAAATCTGAAAATCTTGAACATCATCAAGCTGTCAAACATGCAgTTTCTGAGCTGGGTCCAGAAGATACAAGCAAGAACATAGTTGAAATAATATTCCATTCAAGCTGGCTAAAGAAGCAATCTCCGGTCTGCAAAATCGATCGCATCCTTAAAGTCCACAACACCCAGAAAACCATCTCCAAATTCGAAGAGTACAGAGACTCAATCAAAGCAAAAGCGACAAATCTATCGAAAAAACACCCCCGCTGCATAGCAGACGGAAACGAGCTACTAAGGTTTCATTGCACCACTTTTGTTTGTTCTTTAGGACTAAATGGTTCCTCAAACCTCTGCAACTCAACCTCACAATGCAATGTGTGCAGCATAATAAAACACGGGTTCAAATTGAGTGGCGGAGATGGGATATTGACGACCGCAACGAGCGGGAAAGCACACGACAAAGCTAGTAGGGTTTTGGAGGTTTCGGGTTGTGAGAGTGATGAGAGGAGGGCAATGTTGGTTTGTAGGGTGATAGCAGGAAGAGTGAAGAAGAACATGGAAGGTGGTAGTAATGGAGTGGAAGAGTGTGATTCTGTTAGTGCTGGTGATGTTGGGGCTTATTCTAATTTGGATGAGTTATATGTGTACAATCCACGAGCTATTTTGCCTTGCTTTGTTGTAATCTATAGAGGCTATTGA 1368 0.3947 MSKSKTQRMPTITNHHIVTQKENQRPQKTEKQPSWSVVRGFLACRSVEIQQQQQKEAKQQPQPQPVPEAKQPKKKQQQRKLKEERVSEDNNKKSKKMKCSGSLCNNTGMMAKPETTITTAAAAATRTTTDIHKKKVSLGGCKNNLASSSSRSMKAPLNELNGRTVSASSSSSLSAASSNSSGAGSFKGMPFRRLSGCYECRMVVDPVLGFARDSSLRSSICTCPDCGEIMKSENLEHHQAVKHAVSELGPEDTSKNIVEIIFHSSWLKKQSPVCKIDRILKVHNTQKTISKFEEYRDSIKAKATNLSKKHPRCIADGNELLRFHCTTFVCSLGLNGSSNLCNSTSQCNVCSIIKHGFKLSGGDGILTTATSGKAHDKASRVLEVSGCESDERRAMLVCRVIAGRVKKNMEGGSNGVEECDSVSAGDVGAYSNLDELYVYNPRAILPCFVVIYRGY 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g02012 455 MobiDBLite consensus disorder prediction 49 105 - -
Tsu03g02012 455 Gene3D - 243 453 - -
Tsu03g02012 455 MobiDBLite consensus disorder prediction 1 20 - -
Tsu03g02012 455 MobiDBLite consensus disorder prediction 161 184 - -
Tsu03g02012 455 MobiDBLite consensus disorder prediction 1 37 - -
Tsu03g02012 455 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 35 453 - -
Tsu03g02012 455 MobiDBLite consensus disorder prediction 72 96 - -
Tsu03g02012 455 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 35 453 - -
Tsu03g02012 455 SUPERFAMILY ADP-ribosylation 245 454 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g02012 Tsu-Chr3 20849921 20852205 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g02012 222 451 C2H2 Transcription Factor Family AT5G54630 49.174 2.64e-69 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tsu03g02012 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g02012 - - gmx:100817333 617.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g02012 03 20849921 20852205 Tsu03g02012 03 20849921 20852205 ECH