Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g02000 ATGAGAGAATCCATGAGGGAATCCCCGTTTATGGATGAAATTGAAGTTATTTGGCCCAGtaCTTCCGTCTCCGGTTACATATCTTCAGATCATATCTCATCGGATTTCACTGCTTCATATCTACAATTAATTGGTAGTGATGGCACGTTCTTGTTTTCTCGAAACAAAACGTTCAAGGCGGCTATTTTCAATCCTGACAATCAACAAACAAGTTTCTATCTATGCATCATTCATGCTGCGTCGAACACTATCATTTGGTCTGCTAACCGTGACGCTCCTATCTCTGATTCAGATAAAATGAAACTAACCGATGAAGGGATACAAATTTTCGACAAAAATGGAAATTCCGTATGGTCAACACCACAACTTAAATCACAAGTAAAAAAACTTTCACTCACTGAGATGGGAAACCTTGTGTTACTTGATCAATTCAATAATTCTCTTTGGGAGAGTTTTCAACATCCAACCGATACAATTGTTACCGGTCAACGTTTATCGGTTGGATCATCATTGTCAAGTGCTTCATCAAGTTCAAATTTCTCAACTGGAAATTACAAGCTTACAATCACATCTTCTGATGCAATTCTTCAATGGTTTGGTCAAACATATTGGAAACTTTCAGTAGATTCAAAAGCTTACAGAATTTCACATGATGATGCTCAATACATGACAGTAAACACAACAGGTTTTTATATCTTTGGACATAATGAAACAGTACTTGTTTATCAAGTTGGTTTATCAGTAACTAATTTTCGTATCGCGAAATTGGCTTACAATGGCCAATTTACTATTAGTAGCTTTTCAGGAGAAAGTTTGAAGCATGAATTTGTTGGACCAAATGATGGTTGTCAAATTCCATTAGCTTGTGGAAGATTAGGTTTATGTAATGATAACTCTTCACCTGGTTGTTCTTGTCCTTCAAATTTCCATGTTGCATCAGGTAATTCCGGTGGTTGTGTTCCGAACGATGGATCTCGTTCTTTTTCCGTAGCTTGTAGTAATTCTACTACAAATAATCATAGTCATGATCAATCAAATTCTTCAGTTGTTTCTTTTTTGAGTATAGGATATGGTGTGAAGTACTTTGGAAATAAATATTCTGATACAATTATATATGGAGTGAATTTATCTAGTTGTGAAGATTTATGTTCAAGTAACTGTTCTTGTTTGGGAATTTTGTATAGAAATTCTTCTGGTTCATGCTACATGATTGAAAATGAGTTAGGATCAATTAATAATGGAGGTGAAGGTGACATGTTAGGGTTGATTAAAACTAATGTTAGGTTTGATGTTGATAATGAAGAAAGTTCTCAAAAAGATGGATTTCCTGTTATTGCTGCAGTATTGTTACCAATTGTTGGAATGATTCTTTTAATGGTTCTTGTGATTTTTGTTATATGGAGAAAATTCCGAAAGTCGAAGAAGAAAGAGGTAAAATTAGGGAAACAAATGTCAATCTCACATTCTTCATCTAACTTGGATTCGGATCCCACCTTCTCCATTCCTGGTTTACCTACGAGGTTTGACTACGAAGAACTTGAGGCAGCTACCGATAATTTCAAGACTCTGATAGGATCTGGTGCATTCGGCGTAGTGTACAAAGGTATCCTACCTGATAAGACTATTGTGGCTGTAAAGAAAATAATCAACATTGGAGTTCAAGGGAAGAAAGATTTCATCGCCGAGATAGCTGTTATAGGAAACATTCATCATGTTAATTTAGTTAGACTGAGAGGCTTTTGTGCTCAAAGGGGACACCGAATGTTGGTGTACGAGTACATGAACCGCGGTTCACTTGATCGCAACCTCTTCGGCGGTGTTGGACAACCAGTTTTGGAATGGCAAGAGAGGCTAGATGTTGCACTTGGAACAGCGCGCGGTCTTGCTTATCTTCACAGCGGATGTCAGCAGAAGATAATTCACTGTGATATCAAACCAGAGAATATTCTTTTACATGATCAATTTCAAGCTAAAATATCTGATTTCGGACTTTCGAAACTTCTTAGTCCTGAACAATCTGGTTTGTTCACTACAATGAGAGGAACTCGAGGTTATCTTGCTCCTGAATGGCTCACAAATTCAGCAATTTCGGAGAAAACCGatgtatatagttttggaatGGTGCTTCTTGAATTGATTAGTGGTAGAAAAAACTGTTCTTTCAAATCAAGAAGTCATAGCATGGATGATGATCATAACAATAGCAGTGGAAATAAtagaaattcttcaaattcatcaacaaCTGAACTTGTTTATTTTCCACTATATGCATTAGAGATGCATGAACAAAAGAGTTACATGGATTTGGCTGATCCAAGGCTAGAAGGACGTGTTACAATCGATGAAGTTGAGAAACTTGTTCGAATTGCATTGTGTTGTGTTCATGAAGATCCAGCACTTAGGCCAAACATGGTTACTGTTGTTGGAATGTTGGAAGGTGGAACTCCATTACCACAACCTAGGATGgattcattgaattttttaagGTTCTACGGTCGTAGGTTTTCTGAGGCTTCTGTTataaatgaagaagatgaacatgGTTCTGCGAGGATTCAACAACCGCGTAATTCAACACGGTTGGTTAGTGGCTTTTCTTACATATCTTCACAACAAATCTCAGGGCCAAGATAG 2634 0.3629 MRESMRESPFMDEIEVIWPSTSVSGYISSDHISSDFTASYLQLIGSDGTFLFSRNKTFKAAIFNPDNQQTSFYLCIIHAASNTIIWSANRDAPISDSDKMKLTDEGIQIFDKNGNSVWSTPQLKSQVKKLSLTEMGNLVLLDQFNNSLWESFQHPTDTIVTGQRLSVGSSLSSASSSSNFSTGNYKLTITSSDAILQWFGQTYWKLSVDSKAYRISHDDAQYMTVNTTGFYIFGHNETVLVYQVGLSVTNFRIAKLAYNGQFTISSFSGESLKHEFVGPNDGCQIPLACGRLGLCNDNSSPGCSCPSNFHVASGNSGGCVPNDGSRSFSVACSNSTTNNHSHDQSNSSVVSFLSIGYGVKYFGNKYSDTIIYGVNLSSCEDLCSSNCSCLGILYRNSSGSCYMIENELGSINNGGEGDMLGLIKTNVRFDVDNEESSQKDGFPVIAAVLLPIVGMILLMVLVIFVIWRKFRKSKKKEVKLGKQMSISHSSSNLDSDPTFSIPGLPTRFDYEELEAATDNFKTLIGSGAFGVVYKGILPDKTIVAVKKIINIGVQGKKDFIAEIAVIGNIHHVNLVRLRGFCAQRGHRMLVYEYMNRGSLDRNLFGGVGQPVLEWQERLDVALGTARGLAYLHSGCQQKIIHCDIKPENILLHDQFQAKISDFGLSKLLSPEQSGLFTTMRGTRGYLAPEWLTNSAISEKTDVYSFGMVLLELISGRKNCSFKSRSHSMDDDHNNSSGNNRNSSNSSTTELVYFPLYALEMHEQKSYMDLADPRLEGRVTIDEVEKLVRIALCCVHEDPALRPNMVTVVGMLEGGTPLPQPRMDSLNFLRFYGRRFSEASVINEEDEHGSARIQQPRNSTRLVSGFSYISSQQISGPR 877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g02000 877 Gene3D - 46 184 - -
Tsu03g02000 877 Gene3D Phosphorylase Kinase; domain 1 481 593 - -
Tsu03g02000 877 CDD B_lectin 43 155 IPR001480 -
Tsu03g02000 877 SMART serkin_6 518 811 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g02000 877 CDD STKc_IRAK 524 813 - -
Tsu03g02000 877 Pfam Protein kinase domain 521 805 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g02000 877 Gene3D Transferase(Phosphotransferase) domain 1 594 817 - -
Tsu03g02000 877 SUPERFAMILY Protein kinase-like (PK-like) 493 811 IPR011009 -
Tsu03g02000 877 SUPERFAMILY alpha-D-mannose-specific plant lectins 74 206 IPR036426 -
Tsu03g02000 877 PIRSF SRK 21 864 IPR024171 GO:0004674
Tsu03g02000 877 Pfam D-mannose binding lectin 83 168 IPR001480 -
Tsu03g02000 877 CDD PAN_AP_plant 344 403 - -
Tsu03g02000 877 ProSitePatterns Serine/Threonine protein kinases active-site signature. 639 651 IPR008271 GO:0004672|GO:0006468
Tsu03g02000 877 SMART blect_4 42 155 IPR001480 -
Tsu03g02000 877 ProSiteProfiles Bulb-type lectin domain profile. 35 153 IPR001480 -
Tsu03g02000 877 ProSiteProfiles Protein kinase domain profile. 518 822 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g02000 877 ProSitePatterns Protein kinases ATP-binding region signature. 524 547 IPR017441 GO:0005524
Tsu03g02000 877 Pfam S-locus glycoprotein domain 226 310 IPR000858 GO:0048544
Tsu03g02000 877 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 21 877 - -
Tsu03g02000 877 MobiDBLite consensus disorder prediction 723 746 - -
Tsu03g02000 877 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE 21 877 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g02000 Tsu-Chr3 20717542 20720668 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g02000 449 820 Receptor kinase-like Gene Family AT5G20050 38.918 1.64e-75 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Tsu03g02000 Pkinase 2e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g02000 - - ahf:112766506 1066.6