Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01993 ATGTACATGGATATGGACATGGACATGGATGCTATCCATGACCTCGACTTCTCCGGACACAGCACACTCACAAACACCCCTTCTTCCGATGATGATTACGGTTGCAACTGGAACCAATGGTCTCCCATCGTTAACTGGGACACTTTCACTGGCACCCAGGATGGTTTCCACCACCTCATGGACACCATCATTGATGACAGAACAACCCTCCTCCACCAGCTCAGCccaaccacaaccacaaccaccaccacaaccaccgacgaggaagaagaagaagaaacagaaaCAACTACCACCACCACtaccacaacaacaacagcaacaacagaAAAAGCACAAGCCGTTGAAGATGATATAAAGGGGCTAAAACTAGTGCACCTATTGATGGCTGGCGCGGAAGCCTTAACCGGTTCAACAAAAAACCGCGACTTAGCTAAAGTGATATTGGTTCGGCTCAAGGAGTTGGTTTCAAACCACGCTCACGGCTCTAACATGGAAAGACTCGCCGCTTATTTCACCGAAGCCCTTCACGGTTTACTAGAAGGCGCTGGGGGTGCGCACAATaaccaccaccatcaccaccacaacaataacaacaacaaacattACCTCACAACCGGTGGTCCCCACGACAACCAAAACGATACACTCACAGCTTTCCAACTACTTCAAGACATGTCACCTTACGTTAAATTCGGCCACTTCACAGCCAATCAAGCCATAATCGAGGCAGTGGCCCACGAACGCCGCGTCCATATCATCGATTACGACATCATGGAAGGGGTCCAATGGGCCTCATTAATCCAATCTCTAGCTTCCAACAACAACAGTCCACATCTCCGGATAACAGCATTATCGCGGACAGGAGCAGGAAGGAGATCAATCGCCACGGTACAAGAAACCGGCAGGCGATTAACCTCCTTCGCTGCTTCTCTCAGTCAACCTTTTTCGTTTCACCACTGCAGATTAGACTCTGACGAAACATTCCGTCCTTCTACGTTAAAGCTTGTTCGTGGAGAGGCTTTGGTTTTCAACTGCATGCTGAATTTGCCTCATCTTAGTTACCGTGCACCTGATTCAGTTGCATCATTTTTGAACGGAGCAAAAGCGTTGAATCCAAAGCTTGTAACGTTGGTAGAAGAAGAGGTTGGATCTGTTGTTGGTGGGTTTGTTGAAAGGTTTATGGACTCACTTCATCATTACTCAGCGGTGTTTGATTCATTGGAGGCTGGGTTTCCGATGCAGAATCGGGCCCGGGCTTTGGTGGAGCGTGTATTTTTTGGGCCGAGGATTGCGGGCTCTTTGGGCCGGATTTATAGAACGGGTGGAGAGGAGGAGAGAAAATCGTGGGGGGAGTGGTTAAGTGCGGCAGGGTTTAGGGGAGTTCCGGTGAGCTTTGCGAATCATTGTCAAGCGAAGCTTTTGTTGGGTCTTTTTAATGACGGGTATAGAGTTGAAGAGGTGGGTGTAGGTAGTAATAAGTTGGTTTTGGATTGGAAATTACGGCGTTTGCTTTCTGCTTCACTTTGGActtgttgttcttcttcttcagattctgaTTTATAG 1566 0.4361 MYMDMDMDMDAIHDLDFSGHSTLTNTPSSDDDYGCNWNQWSPIVNWDTFTGTQDGFHHLMDTIIDDRTTLLHQLSPTTTTTTTTTTDEEEEEETETTTTTTTTTTTATTEKAQAVEDDIKGLKLVHLLMAGAEALTGSTKNRDLAKVILVRLKELVSNHAHGSNMERLAAYFTEALHGLLEGAGGAHNNHHHHHHNNNNNKHYLTTGGPHDNQNDTLTAFQLLQDMSPYVKFGHFTANQAIIEAVAHERRVHIIDYDIMEGVQWASLIQSLASNNNSPHLRITALSRTGAGRRSIATVQETGRRLTSFAASLSQPFSFHHCRLDSDETFRPSTLKLVRGEALVFNCMLNLPHLSYRAPDSVASFLNGAKALNPKLVTLVEEEVGSVVGGFVERFMDSLHHYSAVFDSLEAGFPMQNRARALVERVFFGPRIAGSLGRIYRTGGEEERKSWGEWLSAAGFRGVPVSFANHCQAKLLLGLFNDGYRVEEVGVGSNKLVLDWKLRRLLSASLWTCCSSSSDSDL 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01993 521 Pfam GRAS domain family 124 511 IPR005202 -
Tsu03g01993 521 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 5 512 IPR005202 -
Tsu03g01993 521 PANTHER SCARECROW-LIKE PROTEIN 26 5 512 IPR030028 -
Tsu03g01993 521 ProSiteProfiles GRAS family profile. 115 511 IPR005202 -
Tsu03g01993 521 MobiDBLite consensus disorder prediction 74 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01993 Tsu-Chr3 20657959 20659524 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01993 84 511 GRAS Transcription Factor Family AT3G54220 35.080 1.58e-52 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Tsu03g01993 GRAS 6e-99 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01993 - - gmx:100782300 671.003
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g01993 03 20657959 20659524 Tsu03g01993 03 20657959 20659524 ECH