Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01977 atgtCGTTGAGTCCTCCAAGAGAAAGAATCAACGGCCAACGTAGAAACTTCCAACTCTACTGGTGCTTCCAATGCAACCGCACCGTCCGCGTCGCACCATATAACTCCTCAGAATTAATATGTCCACGATGCTTCGGCCAATTCATATGCGAAATCAACATACCAAGACCACGATTAGTGGTGGACTTCACCGCACACGATCCTTCCCCAGAAGCGCGTTTGTTAGAAGCACTTTCCATAATGCTTGATCCACCCATCCGTCGCTTTAACACTGAAACCCAAACACGACGCCCACGTCGTTCCACACAAGAACTTCCCGTGCACCGTCACACAGGAGATAATCATCACCATCCTGACCAACCCGAGCCTGAACCCGGTATCCAACACCGTCCACGTACATGGGTAATTCTTCAACCTATCGATCCATCAAATTCAAACGCGTTTCAACCGGTGATTAATCCACGTGGACGACAAGGACCAATTCCACGTGGCGTTGATTCTAGAGATTACTTTTTCGGCCCAGGATTTAACGAACTAATAGATCAGATAACAGAAAATGACCGGCAAGGACCACCGCCGGTGCCGGAAAGAGGTATAAACGCGATTCCGACGGTGAAAATCGAAAGCAAAAATCTGAAAGAGAATTCGCATTGTCCTGTTTGTCAAGAAGAGTTTGAAATTGGTGGTGAAGCGAGGGAACTTCCATGTAAACATATATATCATTCTGATTGTATTGTTCCATGGCTTAGACTTCATAATTCTTGTCCAATTTGTCGTCAACAGATTAATGTTTGttctgatgaagatgaagatgagtGTGGTGAAGAAGGTGGTGGTGAAGGTAGGTTACGTAGGTGTTTGAGGTGGACTCGTCTTTCTTCTCTTTGGCCTTTTCATGGAAGGTATCGGAGAGTTCATCCTCAAAGGGATAATGGTTCTGCTTCTTCTTCGACTATAAGGGATTCTAATCCAAGGCGCCACTCTTGTTGCATTCTTTAA 999 0.4454 MSLSPPRERINGQRRNFQLYWCFQCNRTVRVAPYNSSELICPRCFGQFICEINIPRPRLVVDFTAHDPSPEARLLEALSIMLDPPIRRFNTETQTRRPRRSTQELPVHRHTGDNHHHPDQPEPEPGIQHRPRTWVILQPIDPSNSNAFQPVINPRGRQGPIPRGVDSRDYFFGPGFNELIDQITENDRQGPPPVPERGINAIPTVKIESKNLKENSHCPVCQEEFEIGGEARELPCKHIYHSDCIVPWLRLHNSCPICRQQINVCSDEDEDECGEEGGGEGRLRRCLRWTRLSSLWPFHGRYRRVHPQRDNGSASSSTIRDSNPRRHSCCIL 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01977 332 PANTHER - 9 276 - -
Tsu03g01977 332 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 181 265 IPR013083 -
Tsu03g01977 332 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 9 276 - -
Tsu03g01977 332 SMART ring_2 218 258 IPR001841 -
Tsu03g01977 332 Pfam Ring finger domain 217 259 IPR001841 -
Tsu03g01977 332 MobiDBLite consensus disorder prediction 306 327 - -
Tsu03g01977 332 SUPERFAMILY RING/U-box 199 264 - -
Tsu03g01977 332 Pfam zinc-ribbon 18 52 IPR039525 GO:0061630
Tsu03g01977 332 MobiDBLite consensus disorder prediction 87 128 - -
Tsu03g01977 332 MobiDBLite consensus disorder prediction 309 324 - -
Tsu03g01977 332 MobiDBLite consensus disorder prediction 90 126 - -
Tsu03g01977 332 CDD RING-H2_RNF126_like 218 259 - -
Tsu03g01977 332 ProSiteProfiles Zinc finger RING-type profile. 218 259 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01977 Tsu-Chr3 20537703 20539767 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01977 190 310 C3H Transcription Factor Family AT1G68180 43.443 3.47e-27 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01977 K11982 - gmx:100787399 385.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g01977 03 20537703 20539767 Tsu03g01977 03 20537703 20539767 ECH