Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01975 ATGGTTAAGTCAGAGAATAACACAAAGATCAAAACAGAACCATTAAGTACAAAACCAAATATTATCTCAGATATTAGCAAGAAAAAGAAGTATAAAGGAGTAAGAATGAGAAGTTGGGGTTCTTGGGTTTCAGAAATTAGAGCACCAAATCAAAAAACAAGAATTTGGTTAGGTTCTTATTCAACTCCAGAAGCTGCTGCTAGAGCTTATGATGCTGCACTTCTTTGTCTCAAAGGTTCTTCCTCTGCATCAAATCTTAATTTCCCTCTAAACTCTTGTTCACATTATtgcaatattaatattaataatcgTCAAGATATGTCtccaaaatcaattcaaagagtTGCTGCAGCTGCTGCAAATAGTTTCATTGACAACAATAATGTTAATGCTGCTACTACTCCTTCATCATCTTCGTCATTGGTTTCATCTCCATCATCAATGGCTTCTTCTTCTGATGATGTTTATGATCAAGCTAATGATGAATCAATGGCTATGATATCAGAAACTAATTGGTATGGATTAGAAGGTTTACAATCTCCTAAATATGTTGATCATATGTTGTTAAGTGCTTCTTTTTTTGATATTGATTCATTATCACATTTGCTTAATGATGATGTGTATGAAGAAAGTGACATTAGTTTGTGGAACTTCAGCTGA 660 0.3167 MVKSENNTKIKTEPLSTKPNIISDISKKKKYKGVRMRSWGSWVSEIRAPNQKTRIWLGSYSTPEAAARAYDAALLCLKGSSSASNLNFPLNSCSHYCNININNRQDMSPKSIQRVAAAAANSFIDNNNVNAATTPSSSSSLVSSPSSMASSSDDVYDQANDESMAMISETNWYGLEGLQSPKYVDHMLLSASFFDIDSLSHLLNDDVYEESDISLWNFS 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01975 219 CDD AP2 29 89 IPR001471 GO:0003700|GO:0006355
Tsu03g01975 219 Pfam AP2 domain 30 79 IPR001471 GO:0003700|GO:0006355
Tsu03g01975 219 MobiDBLite consensus disorder prediction 134 155 - -
Tsu03g01975 219 PRINTS Ethylene responsive element binding protein signature 53 69 IPR001471 GO:0003700|GO:0006355
Tsu03g01975 219 PRINTS Ethylene responsive element binding protein signature 31 42 IPR001471 GO:0003700|GO:0006355
Tsu03g01975 219 Gene3D AP2/ERF domain 29 91 IPR036955 GO:0003700|GO:0006355
Tsu03g01975 219 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF014 18 219 - -
Tsu03g01975 219 ProSiteProfiles AP2/ERF domain profile. 30 89 IPR001471 GO:0003700|GO:0006355
Tsu03g01975 219 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 18 219 - -
Tsu03g01975 219 SUPERFAMILY DNA-binding domain 30 89 IPR016177 GO:0003677
Tsu03g01975 219 SMART rav1_2 30 95 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01975 Tsu-Chr3 20506462 20507298 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01975 31 218 AP2-EREBP Transcription Factor Family AT1G21910 51.471 1.16e-43 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tsu03g01975 AP2 2.8e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01975 - - cam:101495993 239.965
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g01975 03 20506462 20507298 Tsu03g01975 03 20506462 20507298 ECH