Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01962 ATGGAGGACCAAAATGTTAATAGTAAATTGAGCAATGGAGCATTATTTCGCAAGTTGAAACCATATCTAGCTATTTTGTCCCTTCAATTTGGTTACTCGGGGATGTATATTATTACTATGGTTTCTTTTAAACATGGTATGAGTCATTGGATTCTCTCCGTGTACCGTCATGTTGTTGCCGCAATCATAATAACCCCTTTCGCACTTGTTCTCGAAAGAAAAATAAGGCCAAAGATGACTCTCCCCATCTTCTTGAGGATAGTGGCACTTGGTTTCCTTGAGCCAGTGCTAGATCAAAATTTGTACAACATGGGAATGAAGATGACCTCAACAACGTTTGCATCTGCCACTGTTAATGTTCTTCCAGCTATTACTTTTATAATGGCACTCACTTTCAGGTTGGAGTCGGTGAATTGGAAAAAATTTCACAGCGTAGCCAAAGTAATTGGAACGGTTATAACCGTTTCAGGAGCTATGGTTATGACTTTGTATAAAGGCCCTGCCTTTCAGATCATAAAGGGAGGAGGAGCCATCGAACACCACGGTGGTGCCGCTAATGACGAACCATCTGAACAAAATTGGGTGATGGGCACAGTATATCTCATATCAAGTTGTTGTAGTTGGGCTGGATTCTTTATATTGCAATCATTCACTTTGAAGAAGTACCCAGCAGAGCTATCACTCACAGCTTGGATTTGTTTAATGGGTATTATTGAGGGTTCAATTGCATCACTTATATTTGAAAGGGATATGAGTGTGTGGATCATAGGTTGGGACTCAAGGCTTCTTGCTTGTGTTTATTCTggTGTGATATGCTCTGGAATGGCATATTATGTACAAGGAGTTGTAACTAGGGAACGTGGACCAGTTTTTGTGACTTCTTTTAGTCCACTATGTATGATTATCACTGCTGCATTGGGTTCTCTTGTCTTAGCTGAACAAGTTCATCTTGGAAGtATATTTGGAGCTATTCTGATTGTAACTGGACTTTACACTGTGGTGTGGGGAAAAAGCAAAGATCGTCGTGAAAGCATAACAGAAATAGGGAAAGGTGAAGGACAGGATCAATTGCCAATAAAGAATGGAACAAAATCAGAATCATACATTTTGGATGAAATTGAGATTAATGTTTCAgctgaaaaattgaaaaaagggGCAGCAAAAAATGTTCCAACACAAGCATGA 1185 0.3873 MEDQNVNSKLSNGALFRKLKPYLAILSLQFGYSGMYIITMVSFKHGMSHWILSVYRHVVAAIIITPFALVLERKIRPKMTLPIFLRIVALGFLEPVLDQNLYNMGMKMTSTTFASATVNVLPAITFIMALTFRLESVNWKKFHSVAKVIGTVITVSGAMVMTLYKGPAFQIIKGGGAIEHHGGAANDEPSEQNWVMGTVYLISSCCSWAGFFILQSFTLKKYPAELSLTAWICLMGIIEGSIASLIFERDMSVWIIGWDSRLLACVYSGVICSGMAYYVQGVVTRERGPVFVTSFSPLCMIITAALGSLVLAEQVHLGSIFGAILIVTGLYTVVWGKSKDRRESITEIGKGEGQDQLPIKNGTKSESYILDEIEINVSAEKLKKGAAKNVPTQA 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01962 394 Pfam EamA-like transporter family 30 154 IPR000620 GO:0016020|GO:0016021
Tsu03g01962 394 Pfam EamA-like transporter family 196 334 IPR000620 GO:0016020|GO:0016021
Tsu03g01962 394 PANTHER WAT1-RELATED PROTEIN 15 366 - -
Tsu03g01962 394 SUPERFAMILY Multidrug resistance efflux transporter EmrE 55 163 - -
Tsu03g01962 394 PANTHER WAT1-RELATED PROTEIN 15 366 IPR030184 GO:0016021|GO:0022857
Tsu03g01962 394 SUPERFAMILY Multidrug resistance efflux transporter EmrE 258 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01962 Tsu-Chr3 20316595 20320539 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01962 12 366 Nodulin-like Gene Family AT4G08300 66.947 5.35e-171 481
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01962 - - gmx:100783910 650.203
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g01962 03 20316595 20320539 Tsu03g01962 03 20316595 20320539 ECH