LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu03g01958	ATGGTTGGTCCCGTCACGGATCTCAGTCCCTCCGACAATCCCGCCACTCCGCCGGTCCGTAATGTTCGCCGGAGGTTGGTCCAATCAACGCTCTTCCCTCACAAGCCACCACAAACCCGCAACAAACCAGAGGAAAACGATGAAAGCGGTGACGATCAAGACGAGGATTACTGCGACACGAAGAATCGCAGGAAGAGAAAATCCAAAGGAAAAATCACTCCCGTAAATAAAAAAGGTTCCAAGAGTGCCACACCAAAGAAAAATTCTAATGGAAAGAGGCAGAGTGATGGAAAAATCTCTATAGCTAATGCAATTATGGGGTCAACTTCGCGGAATGTTTTGTCTGATTTCGATAAGGTTGATATACCTAAACCCGATTTGTGGTTAGAGGCAAAATTGTCAGCTGAGGAAAATTCAAGGTTGTTTGCAGGACGGCAACCGCATCCAATTTTTTCATCATGTAAAGCGCCGAAGAAAGTTCAAGAGTTGTCTGAACCAGGAAGTAATGTATTCAAAGCTAAGAGTGGGGATGAAAGCATTACATGTGTTCCTATTCATGTTTTTGAAAATATCAAGGATGATACCACATTCATAGACTGGAGAAACTGGTCATTTTTGGGTAATTCCACCCATGTGAATGGTGGTTCAGAAAGTTCAAATTCATCTGTTTTGGGGGGTTCTGTCGAATGCTTAAATTTTGACAAGCTTCTTAGTACTTTGGATCCAGTGGGAGCTTCAAGTTTTCAGAATTCCTCAAATTCTTTGGATATATTTTCTAAGTATCCAGAAAATATGCAAGAAACATCACTGCCAAACTCAACTTTACCAGAGGAGCAAACAATAAGTGCTCCGATGCCAATAGATGCCAATGTGGACTTGGAGGTGGATGAATCTGGTACATTTTCTGTTGAAGCTGGCTATTTTAGAAAGGCACATACTGATGAGCCGATGAGTAGATTTCTTCAAGAAAGTCTGAGGTCATACTATGTTGGTTGTGAGGATAAGGCAGAAAGCAGCTTATGGACATACAAATACAAGCCAACTAAGGCCGTTGAGGTATGTGGTAATGATGAAGCTGTTAATTTCTTGAGTGACTGGCTACATCAGTGGCATGAAAAACGTTACAAACCCAGGAAGGATACGTCTAATAGAGATACAAGGGTCATTCAAGATGACGATGATGATTATATCTGTTCTGACAGTGACTATGATTCGGAAGATATGAATGAGGAGGATTCCCTGCAGAATGTTCTTTTAGTTACAGGACCAATAGGGAGTGGCAAGTCTGCAGCAGTCTATGCTTGTGCCCAAGAGCAAGGCTTTGACATATTAGAGCTCAATGCATCAGATTGTAGAAACGGGACTGTTGTCAAGCAATATTTTGGAGATACTCTTGGTTCACATGGGTTCAAAAGGTTATCGGAACACACAGTGAGTTCACAGAAGATGACTACAAAGTTGCCCCCAGCTCCTGCTTTGGATAATGGTAAAGCTGCAGATGAGGTGAATGACGGAGTAGTTGAACTAATAACCATATCTGATGATGAAGCTTGTAGCCCTGGTGAAATATCACAAAAGTTACATGGCAAGAATAATGTTGCATGTGATAAAGTCCAGACTTTGATTCTGGTTGAGGATGTGGACATACTTTTTCCTGAAGATCGTGGATGTATTGCTGCCATACAACAGATTGCTGAAACGGCAAGGGGGCCAATTATATTGACCAGCAATAGTGATAATCCCGGCCTTCCAGATAGTTTTCATAGGCTTCATGTTTCGTTCTCATTGCCGACACCAAAGGAGTTGCTTTGCCATTTGTACTCTGTTTGTCTCAGAGAAGGAGCCGGCATCCATCCTCTTCTACTGGAGAAGTTTATACAATCCTGTGATGGAGACATCAGGAAAACTATTATGCATCTTCAGTTCTGGTTGCAAagtaaaatatttagaaaagATCTAAAAGCACATACAGGCTATGTCTCACTTCCATTTGATCTTGAGGTTGGTCATCAGATACTACCCAAGATAATGCCATGGGATTTCCCCTCAGAGATATCCGAACTAATTGAGAACGAATTTGTCAAATCAGTAAATAAAATGGAAGAGAATTCCAGTTTGCAAGGGTTAGTTGATGAAGAGCTTCTTCACATAAATGAAAGTCAAAATGATTTAGATGAGGAGTATATGGAGACTGATTATATAAAAGCCAAGAAGGTGGAGATGATTCAGAGAAATGGGTCTATAACAGATTACAGTGAGCTTGAATTTCAATGCAAAGCTATTTCAGAGTTTTCCAATTCTTCTGGATCCCCTGTAGCATCCTATCTGCAAAATGGTCGAAGGAAACTTATAGTAATGTCCTCTGATTCTGAAGAGGAGGATTCAAATAATCGATATCCTCAAGGCACGGACGATAAAGCTGACAAGAGACATTCCATCAAAGGAAATAATGAAATTACTTCTGAGTTTCAGTTGAATGATAATTTCCCCAGCACATCTGTTCGTAAACTGGTTTGTTCTGAATTAGAGGATTCAGATGATGAACATGTTAAATATTCAGAATCAGCTGATGTTACTTGCATAAATGAGATATCTAAATCATCTGATATATCCTGTGTACCAGAATCAACGTTTGTTCCCGAGACTGCAATTGAAAATGGAACCGATACAATGTCTGGAGTGGTGTCTTCTGGCCATTGTCTAGAAGTTTCTGTGAATAATGAGTTAAAACCGTCCACTTTAAGTGTTCGCAGGCGCTTAGCAAAGTTGTCAGAAAATTCAGATATATTGATGGATACTGAAGTTCCAGATTCTTCTCCAAAAGAAGCTCTACAAGATTTTCTAGATGAAAATATGGAAACTACAATCATCAAGGTGATGGATGAGTGCAGCCGTGTGGATTTCAAAATAAGGTCAACATTTGTTGACTCCAGTCCATCATTTGAAACAGATGTGGTACAGAATTTGTGGGAAAAACTCCGACAAATGGATTTAAAACAGTATGCTATCTCAGAACAGCTAGGTGTTTCTCAAGTTGTTAAACTTGCTAGTGGCTTGAGCAATCTAATTTCAGAAGCGGATTTGTTTCATAATTACCAACATAAACATGATATTTTAGAGCCCCGAAGCTTCGTTTCTAATGAAACTTCAACTAGTTGGTACAATGACGAAACAATGATGTCCAGCATTGCTGTGCAtgggttttgtttttatgtcaAGCTTATAGCAGATGTTGGATCAAAGCTAGGTTGTGCGAATAGGATTGATTTAACTTCGGAAGTGTTGGCTTCCACAACTAATACTATGGCATTGGGGAAATTATCCAGACTGGATATTGCCAAAAGCACAGTTATTTATACTGGAAAGGAATTAGAGTTGAACAACCcaataaataatatgaaaagTGAAAATAAAGCATCTCTGTTTGAGGTTGTTCAATCCATTGTTCCTGAAAGAATATCCTTAGCATTGAAAGGTGATATCTTCAATGAATATCTATCTTCATTGCGCCAAATTACAAGGTCAGAAGCAGTCCGTGTTTCACAAGGTGttgaaaagaagagaagaggaaGGTCGCGGGGTGCTCAACATTATTTGAGCAGATGCACAACGCTGTCTCCCGAAGATATAACGTTGGTCAGTGGTGATTTGTACAGGAAGATTTCCTCACAACATACAACTAATGTGGAAAGTAAACTACTATAG	3705	0.393	MVGPVTDLSPSDNPATPPVRNVRRRLVQSTLFPHKPPQTRNKPEENDESGDDQDEDYCDTKNRRKRKSKGKITPVNKKGSKSATPKKNSNGKRQSDGKISIANAIMGSTSRNVLSDFDKVDIPKPDLWLEAKLSAEENSRLFAGRQPHPIFSSCKAPKKVQELSEPGSNVFKAKSGDESITCVPIHVFENIKDDTTFIDWRNWSFLGNSTHVNGGSESSNSSVLGGSVECLNFDKLLSTLDPVGASSFQNSSNSLDIFSKYPENMQETSLPNSTLPEEQTISAPMPIDANVDLEVDESGTFSVEAGYFRKAHTDEPMSRFLQESLRSYYVGCEDKAESSLWTYKYKPTKAVEVCGNDEAVNFLSDWLHQWHEKRYKPRKDTSNRDTRVIQDDDDDYICSDSDYDSEDMNEEDSLQNVLLVTGPIGSGKSAAVYACAQEQGFDILELNASDCRNGTVVKQYFGDTLGSHGFKRLSEHTVSSQKMTTKLPPAPALDNGKAADEVNDGVVELITISDDEACSPGEISQKLHGKNNVACDKVQTLILVEDVDILFPEDRGCIAAIQQIAETARGPIILTSNSDNPGLPDSFHRLHVSFSLPTPKELLCHLYSVCLREGAGIHPLLLEKFIQSCDGDIRKTIMHLQFWLQSKIFRKDLKAHTGYVSLPFDLEVGHQILPKIMPWDFPSEISELIENEFVKSVNKMEENSSLQGLVDEELLHINESQNDLDEEYMETDYIKAKKVEMIQRNGSITDYSELEFQCKAISEFSNSSGSPVASYLQNGRRKLIVMSSDSEEEDSNNRYPQGTDDKADKRHSIKGNNEITSEFQLNDNFPSTSVRKLVCSELEDSDDEHVKYSESADVTCINEISKSSDISCVPESTFVPETAIENGTDTMSGVVSSGHCLEVSVNNELKPSTLSVRRRLAKLSENSDILMDTEVPDSSPKEALQDFLDENMETTIIKVMDECSRVDFKIRSTFVDSSPSFETDVVQNLWEKLRQMDLKQYAISEQLGVSQVVKLASGLSNLISEADLFHNYQHKHDILEPRSFVSNETSTSWYNDETMMSSIAVHGFCFYVKLIADVGSKLGCANRIDLTSEVLASTTNTMALGKLSRLDIAKSTVIYTGKELELNNPINNMKSENKASLFEVVQSIVPERISLALKGDIFNEYLSSLRQITRSEAVRVSQGVEKKRRGRSRGAQHYLSRCTTLSPEDITLVSGDLYRKISSQHTTNVESKLL	1234

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu03g01958	1234	MobiDBLite	consensus disorder prediction	75	99	-	-
	Tsu03g01958	1234	MobiDBLite	consensus disorder prediction	787	811	-	-
	Tsu03g01958	1234	MobiDBLite	consensus disorder prediction	1	99	-	-
	Tsu03g01958	1234	CDD	AAA	410	479	-	-
	Tsu03g01958	1234	PANTHER	CHECKPOINT PROTEIN RAD17/RAD24-RELATED	123	1229	-	-
	Tsu03g01958	1234	Gene3D	-	597	659	-	-
	Tsu03g01958	1234	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	339	650	IPR027417	-
	Tsu03g01958	1234	PANTHER	CELL CYCLE CHECKPOINT PROTEIN RAD17	123	1229	IPR004582	GO:0006281
	Tsu03g01958	1234	Gene3D	-	338	594	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu03g01958	Tsu-Chr3	20269459	20278801	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu03g01958	337	642	Core DNA Replication Machinery Family	AT5G22010	24.038	2.26e-10	63.2

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu03g01958	-		-	gmx:100784209	1525.38

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Tsu03g01958	03	20269459	20278801	Tsu03g01958	03	20269459	20278801	ECH