Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01930 ATGCTAATTTTGTTGGTTGCTGTTTGTGGTAAATCTAAAAGGGTTGATTCCCACAAGTCATTGAACACCAAGTCAAAGGAGGCTGAGGAAATTGATTGGGTGCATTTGAAGGAACCATGCAATGCAATAGTTATGCAGGAGCTCATTGCcaagaaggaaaagaaaattgaaagtaaCTTAATGGAGGAGACTTGCAAGGAATATGTGACGTGGAAAGCTAGAACTGATCATCGCCTTACTGAAATCATGGCTTCTATGAAGAATTTGCAGTCAATTTTTGTTGCAAGTGATGGGAATGTGCTATCCTCTTATGTGTGGTGTGTAGGGGTGGCAAAACGGGCCCGGCCCGCCGGCCCGGCCCGTTTGACCCGCCATTTTTGGCGGGTTGGACAAAGCTTCCTCTTTTCCATTGATCTTAGTTTGTGTTTTTCTGACAAAGACCTCAGCTTGTTTATTGTTCTCACTTTCAGAAATTCAATATCATGGCAGAACTATTTTCATAGAGAACTTGACGAGTTGGTGGAAGAACTTGAGTCTACACTCGATTCTATCAACCAAGTGTTAGATGATGCGGAGATCAAGCAATACCAAATCCCAAACGTCAAGAAGTGGCTTGGTGATGTTAAACATGCTATGTATGAGGCTGATCAACTACTAGATGAGATTGCTACTGATGCACCACTCAAGAAGCAGAAGGCCGAATCTCAACCTTCTACTAGCTATAATATTGTCAACTTCATTCCTACTTTTACGAATCCATTTGAATCCAGGATcaaagaattgataaagagcaTGCATTCTCTTATAGAGCAGAAGGATAAACTGcaattgaaaaatcaaatgtATGCCGGTAATGCAGTTGGATTCAATTTGAAACCTTCAGGAATAGAAGAAACTACATGTTTGGTGGATGCATCTGGAATATATGGCAGAGGCGGTGATACAGAAGAAATGATCAAAATTTTACTTTCTTCCGAGAATGGTAGCAGCAACAAGACACCTATAATCAGCATAGTGGGTTTGGGTGGGATGGGCAAGACCACCTTTGCTAAGGTTGTGTACAATGACAATAAGATAGAGGAGCATTTTGAACTTAAAGCTTGGGTCTATGTTTCAGAATCTTTTGATGTTGTTGGACTCACCAAAGAAATTCTCAAGACATTTAATTCTTCGACAGAGGGTGAATCGAATTTAAATATACTCCAACTGTGGCTGCAACAAACACTAATTGGCAAAAAGTATCTGCTTGTTTTGGACGATATTTGGAATGGAAATGAAGAGAGTTGGGAGAAGTTACTACTTCCCTTTAACCATGGATCTTCTGGAAGTAAGATTATTGTGACCACACGTGACAAGGAGATAACACATGTCCTGAAATCCACCAAGTTATTTAATTTACAACAATTGAACAAAAGCGATTGTTGGAGTTTATTTGTTACACATGCGTTTGATGGCAAGAAATTGGATGAATATCCACATCTTGAACAAATTGGCATGAAAATAGTCGACAAGTGTGGAGGGTTGCCTTTAGCTGTAAAAACACTAGGCCAACTCTTGCGAAGAAAATTCTCTGAACATGAATGGAGGAAGATATTAGAGACTGATATGTGGCGATTATCAGATGAGGTTAACAACATTAACCCAGTGTTGAGGTTGAGTTACCATCATCTCCCATCTAATCGGAAGCGTTGCTTTGCTAATTGTTCTATATTTCCCAAAGGTTATGACTATGACAAAGGTGTATTAATCAAGTTTTGGATGGCTGAAGGTTTGCTGAAGTGCATTGGGGCAAACAAAGCTGAAGAAGAGTTGGGTAATGAAATTTTCAGCGATCTTGAGtcaatttcatttttccaaaaatcatttttccaCAAATTTGTCATGCATGATCTTGTCAATGATTTAGCAAAATCAGTGTCAGGAGAATTTTGTATGCAAATAGAGGGTTCTAGGGTGGAGGGTATCCCTGAAAGAACACGTCACATTTGGCTGTCATTGGAAAATTTAAATTGTGGTGATAAATTACTAGAGCCAATTTGTGAGTGCAAGGGACTACGTAGTCTGATAGTAGAACGCTACACAGCTACATTGATAAGCAACAATGTGCAACTTGATCTGTTTTCAAGACTATCATGTTTGCGGATGTTATCATTTAGAGGTTGTGGTCTCTCAGAGCTAGTTGATGAGATAggcaatttaaaacttttgcgTTATCTAGACCTTTCTTGGACTAATATTGCAAGCTTACCTGATACCATATGGAAATTGTATAATTTGCAAACACTCTTGTTGCAAGGGTGTCATAAATTGACAGAGCTCCCTTCAAATTTTTCCAAACTCATCAATTTACAGCATCTTGAATTctcttatataaaaaagatgCCAAAGAATATAGGAAAGTTGAACAAACTTCAGTCCTTAACTTACTTTATCGTGGAAGAGCAGAACGGATCTGTTCTTAAGGAGTTGGAGAAACTGAACCATCTTCATGGAAGAATTCATATTACAGGACTGGGTAATGTCATTGATCCTGCAGATGCTGTGATGGCCAATTTGAAAGATAAGAAGTATTTAGAAGAATTACATATGAAGTTCTATGATAATAGAGAGGAAATGAATGACTCAATTGTTGAAAGTAATGTATCTGTCTCGGAGGCTCTTCAACCAAATTGCAACTTGAAAAGGCTCACTGTTGAATACTACAATGGCAACTCTTTTCCAAATTGGTTAAGGGGTTGTCATTTACCTAACTTAGTATATCTTAAACTGCAGAATTGTGGATTATGTTCTCATTTGCCGCAGCTCGGTCAGCTTCCTTGTCTCAAGGAGCTTTCCATTTCACATTGTGATGGAATAAAGACCATCAGCAAAGAATTTTATGACAATAATTCAACCAGTCTTCCATTCAGGTCACTTGAATGTTTGCAATTTGAGAAGATGGACAATTGGGAGGAATGGCTATGTCTTGAAGGGTTTCCTTTGCTGAAAAAGCTATGTATAAGAAAATGTCCTAAACTGAAAAGGGCTCCGCCTCAACACGGTCCTTCTTTACAAATATTGGAGTTAAGTGATTGCAACAAGTTGGAAGAATGTTTATGTCTTGAAGGATCTCCTTTACTTGAAAATGTTTCTATGAGTAATTGTTCCAAATTGAAAAATGCACCCCTGCCTCAACATCTTCCTTCTTTACAAAAATTGAAGATTCATGATTGTGAAATGTTGGAGATATCAATTCCTAAGGGTGATAGTATGATAGAGTTAGATCTATGGAAATGTGATCGGATTTTGGTAAATGAATTGCCGACCAGCTTGAAAAAGTTTGTCCTTTGGGAAAATCCGTACGCCGAGTTCTCTGAGGAGCAAAATTTAGTAAACTGTACCATTCTTGAAAGTTTGATGTTGGATTTAAAAGGAATTTTAAAACGTCCCTCTTTAGATCTGCGTTGCTATAATTCTCTTCGCAAACTTGAAATAAGAGGATGGGACTCATCCTCCTTGCCTTTTTCACATCTCTTCACCAATCTTCATTATCTCTATTTGTACGATTGCCCACAGTTGGAATCATTTCCAAGGGGAGGTTTGCCTTCCAACTTGCGCAAACTTGAAATAGAGAATTGCCCAAAACTGATTGGTTCGAGAGAGTAG 3645 0.3737 MLILLVAVCGKSKRVDSHKSLNTKSKEAEEIDWVHLKEPCNAIVMQELIAKKEKKIESNLMEETCKEYVTWKARTDHRLTEIMASMKNLQSIFVASDGNVLSSYVWCVGVAKRARPAGPARLTRHFWRVGQSFLFSIDLSLCFSDKDLSLFIVLTFRNSISWQNYFHRELDELVEELESTLDSINQVLDDAEIKQYQIPNVKKWLGDVKHAMYEADQLLDEIATDAPLKKQKAESQPSTSYNIVNFIPTFTNPFESRIKELIKSMHSLIEQKDKLQLKNQMYAGNAVGFNLKPSGIEETTCLVDASGIYGRGGDTEEMIKILLSSENGSSNKTPIISIVGLGGMGKTTFAKVVYNDNKIEEHFELKAWVYVSESFDVVGLTKEILKTFNSSTEGESNLNILQLWLQQTLIGKKYLLVLDDIWNGNEESWEKLLLPFNHGSSGSKIIVTTRDKEITHVLKSTKLFNLQQLNKSDCWSLFVTHAFDGKKLDEYPHLEQIGMKIVDKCGGLPLAVKTLGQLLRRKFSEHEWRKILETDMWRLSDEVNNINPVLRLSYHHLPSNRKRCFANCSIFPKGYDYDKGVLIKFWMAEGLLKCIGANKAEEELGNEIFSDLESISFFQKSFFHKFVMHDLVNDLAKSVSGEFCMQIEGSRVEGIPERTRHIWLSLENLNCGDKLLEPICECKGLRSLIVERYTATLISNNVQLDLFSRLSCLRMLSFRGCGLSELVDEIGNLKLLRYLDLSWTNIASLPDTIWKLYNLQTLLLQGCHKLTELPSNFSKLINLQHLEFSYIKKMPKNIGKLNKLQSLTYFIVEEQNGSVLKELEKLNHLHGRIHITGLGNVIDPADAVMANLKDKKYLEELHMKFYDNREEMNDSIVESNVSVSEALQPNCNLKRLTVEYYNGNSFPNWLRGCHLPNLVYLKLQNCGLCSHLPQLGQLPCLKELSISHCDGIKTISKEFYDNNSTSLPFRSLECLQFEKMDNWEEWLCLEGFPLLKKLCIRKCPKLKRAPPQHGPSLQILELSDCNKLEECLCLEGSPLLENVSMSNCSKLKNAPLPQHLPSLQKLKIHDCEMLEISIPKGDSMIELDLWKCDRILVNELPTSLKKFVLWENPYAEFSEEQNLVNCTILESLMLDLKGILKRPSLDLRCYNSLRKLEIRGWDSSSLPFSHLFTNLHYLYLYDCPQLESFPRGGLPSNLRKLEIENCPKLIGSRE 1214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01930 1214 Coils Coil 258 278 - -
Tsu03g01930 1214 PRINTS Disease resistance protein signature 335 350 - -
Tsu03g01930 1214 PRINTS Disease resistance protein signature 1012 1028 - -
Tsu03g01930 1214 PRINTS Disease resistance protein signature 408 422 - -
Tsu03g01930 1214 PRINTS Disease resistance protein signature 505 519 - -
Tsu03g01930 1214 Gene3D Ribonuclease Inhibitor 671 1078 IPR032675 -
Tsu03g01930 1214 Gene3D - 157 274 - -
Tsu03g01930 1214 SUPERFAMILY L domain-like 627 1207 - -
Tsu03g01930 1214 PANTHER DISEASE RESISTANCE PROTEIN RP 168 1081 IPR044974 GO:0006952
Tsu03g01930 1214 Pfam NB-ARC domain 330 555 IPR002182 GO:0043531
Tsu03g01930 1214 Gene3D - 468 553 IPR042197 -
Tsu03g01930 1214 Coils Coil 167 194 - -
Tsu03g01930 1214 Gene3D - 554 639 IPR036388 -
Tsu03g01930 1214 Gene3D - 299 464 IPR027417 -
Tsu03g01930 1214 PANTHER OS05G0414200 PROTEIN 168 1081 - -
Tsu03g01930 1214 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 298 568 IPR027417 -
Tsu03g01930 1214 Gene3D Ribonuclease Inhibitor 1082 1212 IPR032675 -
Tsu03g01930 1214 Pfam Rx N-terminal domain 166 236 IPR041118 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01930 Tsu-Chr3 19982054 19994054 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01930 307 639 WRKY Transcription Factor Family AT5G45050 24.118 3.23e-11 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01930 - - mtr:MTR_3g022600 1296.95